Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq62 235 7e-56 seq100 102 1e-15 seq109 96.9 4e-14 >seq62 Length=232403 Score = 235 bits (260), Expect = 7e-56 Identities = 337/471 (72%), Gaps = 19/471 (4%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 196434 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 196493 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| |||||||| | ||||| ||||| ||||| | ||||| | || ||| Sbjct 196494 TAGCCGTTCGTGCCCGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 196553 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| |||||||||||||||||||| || Sbjct 196554 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCA 196613 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||| || ||||||| || || || |||||||| |||||||| | ||| ||| Sbjct 196614 ATCGAATCATCCTTCATCGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCG 196673 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 || |||||||| || |||| || |||||| | || |||||| || ||| | | Sbjct 196674 GCATTGAAGAGTGTCGGCGAGGCGTGGGTGAAGTAGCGCTCAGACATGAGGTTGTACGAT 196733 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | |||| | ||| | |||||| Sbjct 196734 TGCAAG-ACGCGC------------TCGATGTCGTGA---CCATGGATGCCAACGGCGAC 196777 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 ||||||||||||| ||| || || ||| | || |||| || | | || ||||| Sbjct 196778 ACGCATGAGCATGTGCTGCGGGCGTTCGGCTACCTTGCCGTCGATGCGAAG-CAAGTAGG 196836 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | || ||| |||||||||| || | ||||||||||||| Sbjct 196837 AGCGCTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 196887 Score = 125 bits (138), Expect = 9e-23 Identities = 176/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 |||||||||||||||| ||| || || |||||| | ||||||| ||||||||||| Sbjct 194823 TGGTCGACGGTAAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCCC 194882 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || || ||| ||||| |||||||||||||| || | ||| | | Sbjct 194883 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGCGCCATCGTTGGG 194942 Query 1627102 -TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGC 1627160 ||| | ||| | ||||||||| || |||||||| ||| | |||||||||| Sbjct 194943 CTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCGCCTCGATCGGCCGA 195001 Query 1627161 CATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGGT 1627219 || ||||| | | | ||| | | |||||| ||||||||| ||||||||||||| | Sbjct 195002 CAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 195060 Query 1627220 CG 1627221 || Sbjct 195061 CG 195062 Score = 111 bits (122), Expect = 2e-18 Identities = 291/450 (65%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 1628152 GGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTC 1628211 |||| ||| ||| || |||||||||||||||||| | |||| | |||| || |||||| Sbjct 195984 GGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGGTTC 196043 Query 1628212 TGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCG 1628271 | ||||| | | ||| ||||||| |||| ||||||| |||| ||| || ||| Sbjct 196044 TTTTGGTTCGATTTTTTGTTCGCGGCGTCTTTGTAGAGCATGAAGGGGTTGCCAGTTTCG 196103 Query 1628272 ATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGCG 1628330 | ||| || | | || || |||| | | ||||||| | || | || ||||| Sbjct 196104 ACCTGGGCTTCAAGAATCGCGTACCAAAGTTTTTGCGCGGGGATCGTCT-TCTTGGCGCG 196162 Query 1628331 GCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAG 1628390 ||||| || | |||| ||| ||||| || Sbjct 196163 GCCCTCCTTTTCGTATTTTTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAG 196222 Query 1628391 GCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCAT 1628450 |||||| || || | || || ||||| | ||| ||||| ||| | | | || ||| Sbjct 196223 GCCGGGGGCTTCAGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCAT 196282 Query 1628451 AAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCC 1628510 ||| || || |||| || || | ||||| || || || ||| ||||||||||| Sbjct 196283 AAACAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCC 196342 Query 1628511 GTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCA 1628570 |||||||| ||||| || | |||| | ||| |||||||| ||||| |||||| Sbjct 196343 ATGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGAT 196402 Query 1628571 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 196403 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 196432 >seq100 Length=1849583 Score = 102 bits (112), Expect = 1e-15 Identities = 151/212 (71%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| || | | ||||| ||| || | ||||||||||||||||| | || Sbjct 202148 GCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAGGTCTGGATCTCGCGCGAGGAGA 202089 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 |||| ||| | |||| || ||| || | |||||| | ||| || |||| Sbjct 202088 TCGTCGCCTTGTGGTTGT---AGGTCGCGAGCTTGGAAGCCTCGAGGGAGATACGCTCGA 202032 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| ||| ||||| Sbjct 202031 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCCGTGTCGG 201972 Query 1254520 GGTGCACCTGCTTGAGCACCT---TGTAGATG 1254548 |||| || ||||| | ||| | |||||||| Sbjct 201971 GGTGGACTTGCTTCAACACTTTGCTGTAGATG 201940 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 520092 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 520151 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||| | |||| || ||| || | || ||| | |||||| || | Sbjct 520152 TGGTCGCCTTGTGGTTGT---AGGTCGCGAGCTTGGACGCTTCGAGGGTGATGCGCTCAA 520208 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | ||||| |||||| ||||| || ||||| Sbjct 520209 AGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAGATACCGGTGTCGG 520268 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||||||| Sbjct 520269 GGTGGACTTGCTTCAACACCTTG 520291 Score = 93.3 bits (102), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 1292028 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 1291969 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||| | |||| || ||| || | || ||| | |||||| || | Sbjct 1291968 TGGTCGCCTTGTGGTTGT---AGGTCGCGAGCTTGGACGCTTCGAGGGTGATGCGCTCAA 1291912 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | ||||| |||||| ||||| || ||||| Sbjct 1291911 AGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAGATACCGGTGTCGG 1291852 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| || ||||| | ||||||| Sbjct 1291851 GGTGGACTTGCTTCAACACCTTG 1291829 >seq109 Length=1431625 Score = 96.9 bits (106), Expect = 4e-14 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 377190 ATCGGTGGGACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCCGTG 377131 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 377130 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATCCCTGCAACCAAGGG 377072 Query 19172 ATTCGAGATTGG 19183 || || ||||| Sbjct 377071 CTTTGAAATTGG 377060 Score = 87.8 bits (96), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| |||| || | | || || || || | Sbjct 462911 TCGACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGG 462970 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | ||||||||||||| ||||| | | || ||| |||||||| | Sbjct 462971 GCCGCCACAAGCTCGTCATCCTCGACGAAGCCGATTCGATGACCCCGGGAGCCCAGCAAG 463030 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || |||||| | ||||||| || ||||| ||| | ||||||||| Sbjct 463031 CGCTCCGCAGGACGATGGAACTCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACC 463090 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCAT 1574230 | | | |||||||| | | || ||||| |||||||| Sbjct 463091 AGAGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCAT 463133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107127136491599