Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq62 201 2e-45 seq100 122 1e-21 seq73 116 6e-20 seq60 113 7e-19 seq109 86.0 1e-10 >seq62 Length=232403 Score = 201 bits (222), Expect = 2e-45 Identities = 200/259 (77%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| || | |||||| || Sbjct 196434 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 196493 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| |||||||| | ||||| ||| | ||||| | ||||| | || ||| Sbjct 196494 TAGCCGTTCGTGCCCGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 196553 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||||||||| || Sbjct 196554 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCA 196613 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || ||||||| | ||| || |||||||| |||||| | | ||| ||| Sbjct 196614 ATCGAATCATCCTTCATCGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCG 196673 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 ||||||||||| || |||| Sbjct 196674 GCATTGAAGAGTGTCGGCG 196692 Score = 145 bits (160), Expect = 1e-28 Identities = 298/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| || || ||||||||||||||| | |||| | | ||||| |||||| Sbjct 195984 GGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGGTTC 196043 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 | ||||| | ||| ||||||| |||| |||||| |||| || || ||| Sbjct 196044 TTTTGGTTCGATTTTTTGTTCGCGGCGTCTTTGTAGAGCATGAAGGGGTTGCCAGTTTCG 196103 Query 2071684 ATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGG 2071743 | ||| || | || || |||||| || ||||||| | || || | |||||| Sbjct 196104 ACCTGGGCTTCAAGAATCGCGTACCAAAGTTTTTGCGCGGGGATCGTCTTCTTGGCGCGG 196163 Query 2071744 CCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGG 2071803 |||| | | |||| || | |||| | | ||||| ||| Sbjct 196164 CCCTCCTTTTCGTATTTTTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGG 196223 Query 2071804 CCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATA 2071863 ||||| || || | ||||| ||||| | ||| |||||| | | | | || || |||| Sbjct 196224 CCGGGGGCTTCAGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATA 196283 Query 2071864 AACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCG 2071923 ||||| ||| |||| || | | |||||||| || || ||| ||||||||||| Sbjct 196284 AACAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCA 196343 Query 2071924 TGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAG 2071983 |||||||| ||||| || | |||| || ||| |||||||| ||||| |||||| Sbjct 196344 TGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATC 196403 Query 2071984 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 196404 GCGAAGGCTCCGGGACGCTTGTTGCCACC 196432 Score = 116 bits (128), Expect = 6e-20 Identities = 173/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 |||||||||||||||| ||| || | |||| | || ||||||| ||||||||||| Sbjct 194823 TGGTCGACGGTAAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCCC 194882 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA-TGGACTCGGCATTCGG 2069369 ||||| || || || ||| ||||| |||||||||||||| | | | | || || Sbjct 194883 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTGCGCCATCGTTGGG 194942 Query 2069370 GACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGC 2069429 || || ||| || ||||||||| || |||||||| ||| | || ||||||| Sbjct 194943 CTCGACA-AGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCGCCTCGATCGGCCGA 195001 Query 2069430 CATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAGAT 2069488 || ||||| | | | ||| || | |||||| ||||||||| | | ||||||||||| Sbjct 195002 CAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGAT 195060 Score = 89.7 bits (98), Expect = 8e-12 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| ||||| ||| | Sbjct 195683 CGCGGCGTGGTAGATGGTCTCGAAGATT-TGCTTGTTGAGCTTGCGCGCCTCGGGCGAAT 195741 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| | | || ||||||||||| || || ||||| |||| ||| || Sbjct 195742 CGAACGGCATCGCCA--AGGCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCGAT 195799 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||| |||| | | |||||| || || |||| ||| | |||||| Sbjct 195800 GGGGCGGTGGCGGAAGTTGGAGTTCTGCGCCTCGATGACGGGATAGTAGTTAACGTCGAT 195859 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 195860 GATGCGGTTCAAGTTG 195875 >seq100 Length=1849583 Score = 122 bits (134), Expect = 1e-21 Identities = 164/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| || | | ||||| ||| || | Sbjct 202172 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCG 202113 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | | |||||| ||| | |||| || ||| || | Sbjct 202112 AGGTCTGGATCTCGCGCGAGGAGATCGTCGCCTTGTGGTTGTAGGT---CGCGAGCTTGG 202056 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| || |||| ||||||||||| |||||||| | ||| ||||| Sbjct 202055 AAGCCTCGAGGGAGATACGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 201996 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| ||||||||| || ||||| | ||| ||| Sbjct 201995 CCTTGTTCGAGATACCCGTGTCGGGGTGGACTTGCTTCAACACTTTG 201949 Score = 109 bits (120), Expect = 9e-18 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 520068 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 520127 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||| | |||| || ||| || | Sbjct 520128 AGGTCTGGATCTCGCGCGACGAGATGGTCGCCTTGTGGTTGTAGGT---CGCGAGCTTGG 520184 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 || ||| | |||||| || | ||||||||||| |||||||| | |||| ||||| Sbjct 520185 ACGCTTCGAGGGTGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATCAGCATCG 520244 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| || ||||| | ||||||| Sbjct 520245 CCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGCTTCAACACCTTG 520291 Score = 109 bits (120), Expect = 9e-18 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 1292052 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 1291993 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||| | |||| || ||| || | Sbjct 1291992 AGGTCTGGATCTCGCGCGACGAGATGGTCGCCTTGTGGTTGTAGGT---CGCGAGCTTGG 1291936 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 || ||| | |||||| || | ||||||||||| |||||||| | |||| ||||| Sbjct 1291935 ACGCTTCGAGGGTGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATCAGCATCG 1291876 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| || ||||| | ||||||| Sbjct 1291875 CCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGCTTCAACACCTTG 1291829 >seq73 Length=1824528 Score = 116 bits (128), Expect = 6e-20 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 ||| ||||| ||||||| | || ||||| || ||| | || |||| |||||| Sbjct 1428422 AAAGCACCTCGCCTCGGCGAACTGCACCTCGCTCGAGAACCTCTCGACCAGATTCTCATT 1428363 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 ||||| || || |||||||| |||||||| ||||| |||||||| || ||||| Sbjct 1428362 CACGACCCCATCCGAAGCGGCGAAGAAGGCGAGCACGTGGGCGATAAAGTAGCGTTCGTC 1428303 Query 796260 GTCGCTGAGCGAGAC---CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGT 796316 || | ||||| | ||||| | |||| ||||||||||| ||| ||||||| Sbjct 1428302 GTTGTTGAGCTTGTGGTGCCAGTCGTGGAGGTCGTTGCCGAGGTCGATCTCTTCGGCGGA 1428243 Query 796317 CCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||||||| || | ||| | ||||||||| |||| ||| Sbjct 1428242 CCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCAAATC 1428203 >seq60 Length=1146088 Score = 113 bits (124), Expect = 7e-19 Identities = 144/198 (73%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| ||| || || ||| |||||| ||||||||| Sbjct 223852 GCCTCGGCTGACTGGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACGATGCCG 223793 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||||| Sbjct 223792 TCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGC 223733 Query 796270 ---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | | | || | | ||| | ||| ||||||||||||||||| Sbjct 223732 TTGTTGTCCCAGTCGTGCATATCCTTGGACAAGTCCATCTCTTCGGCGGTCCAAAAGGAT 223673 Query 796327 GCCTCGGCCTTTTTGTAC 796344 |||||||| || |||||| Sbjct 223672 GCCTCGGCTTTCTTGTAC 223655 >seq109 Length=1431625 Score = 86.0 bits (94), Expect = 1e-10 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGC 2019206 |||||||| || | ||||||| | ||| ||||| || || || || ||| Sbjct 462913 GACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGGGC 462972 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266 ||||||||| | |||||||||| || ||||| | | || ||| |||||||| || Sbjct 462973 CGCCACAAGCTCGTCATCCTCGACGAAGCCGATTCGATGACCCCGGGAGCCCAGCAAGCG 463032 Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326 ||||| ||| |||||| | | ||||||| || || || || | || |||||| | Sbjct 463033 CTCCGCAGGACGATGGAACTCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACCAG 463092 Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386 | | ||||||| | | ||||| || |||||||||||| | | || | || Sbjct 463093 AGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCATCTTGAGGTACTCGAGGCTG 463152 Query 2019387 ACCGACGCCCAG 2019398 ||||| ||| || Sbjct 463153 ACCGATGCCGAG 463164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916230762939533