Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12-
23] 147 sequences; 31,827,297 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq109 100 2e-16
seq73 100 2e-16
seq65 89.7 3e-13
>seq109
Length=1431625
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| |||||||| || || || ||| || || |||||||||||||
Sbjct 870390 ACCACCGCGGAGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGC 870331
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| ||||| | || || | || || || ||||| ||||| ||||| || ||| | ||
Sbjct 870330 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGG 870271
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| ||||| ||| || || | || | ||| | ||||| || || |
Sbjct 870270 AATGCCTTCCTTGTCTTGAATCTT-GGTCTTGACGTTGTCAATCGTGTCCGACGACTCGA 870212
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | |||||||| || || || | ||| || || |||||||||||
Sbjct 870211 CCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTAACGAAGATCTGCAT 870163
Score = 98.7 bits (108), Expect = 7e-16
Identities = 154/218 (71%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| |||||||| || || || ||| || || ||||||||||||| ||| ||||| |
Sbjct 870606 ACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCC 870547
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| || | || || || ||||| ||||| ||||| || ||| | || | ||||| ||
Sbjct 870546 ATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTT 870487
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| ||| || || | || | ||| | ||||| || || || || | ||||
Sbjct 870486 GTCTTGAATCTT-GGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGA 870428
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|||| || || || | ||| || || ||||||||||||
Sbjct 870427 TCGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCATA 870390
Score = 89.7 bits (98), Expect = 3e-13
Identities = 152/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || || || ||| || || ||||||||||||| ||| ||||| |
Sbjct 870834 ACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCC 870775
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| || | || || || ||||| ||||| ||||| || ||| | || | ||||| ||
Sbjct 870774 ATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTT 870715
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| ||| || || | || | ||| | ||||| || || || || | ||||
Sbjct 870714 GTCTTGAATCTT-GGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGA 870656
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|||| || || || | ||| || || ||||| ||||||
Sbjct 870655 TCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCATA 870618
>seq73
Length=1824528
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | || ||| | |||||| || || || ||| ||||| |||||||||||||
Sbjct 212642 CACCACCACGCAGACGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGG 212701
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
||| ||||| | || || | || || |||||||| || | ||| ||||| ||| |||
Sbjct 212702 CGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCG 212761
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||| ||||| || || || | || | ||| | |||||| || ||
Sbjct 212762 GGATGCCTTCCTTGTCTTGGATCTT-GGTCTTGACGTTGTCGATCGTGTCGGACGACTCG 212820
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCA 33748
|| || | ||||| || || || || | || || |||||||| ||||
Sbjct 212821 ACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 212869
>seq65
Length=1908199
Score = 89.7 bits (98), Expect = 3e-13
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| | || | ||||| || || || ||| ||||| ||||||||||||| |
Sbjct 1743317 CCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCG 1743376
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || || | || || |||||||| || | ||| ||||| ||| ||||
Sbjct 1743377 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 1743436
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| || || || | || | ||| | |||||| || || ||
Sbjct 1743437 ATGCCTTCCTTGTCTTGGATCTT-GGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 1743495
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGC 33747
|| | |||||||| || || || | || || |||||||| |||
Sbjct 1743496 CTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 1743541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703411106240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |