Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq62 228 1e-53 seq60 102 1e-15 seq100 96.9 5e-14 seq73 91.5 2e-12 >seq62 Length=232403 Score = 228 bits (252), Expect = 1e-53 Identities = 284/388 (73%), Gaps = 17/388 (4%) Strand=Plus/Minus Query 259795 CGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGT 259854 ||| || || ||| | |||||||||||||||||| ||||| |||| | |||| | Sbjct 196805 CGAACGCCCGCAGCACATGCTCATGCGTGTCGCCGTTGGCATCCATGG---TCACGACAT 196749 Query 259855 CGACAATGCGCTGGAGCACGTGCTCGCCACC-TACGAGGCCATGTCGCAGCAGTTGTTCA 259913 ||| || ||| || || | | ||| | |||||| ||| | |||| Sbjct 196748 CGA------------GCGCGT-CTTGCAATCGTACAACCTCATGTCTGAGCGCTACTTCA 196702 Query 259914 CCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCT 259973 || || |||| || ||||| |||||||| ||||| | ||||||| ||||||||| | Sbjct 196701 CCCACGCCTCGCCGACACTCTTCAATGCCGGAACGCCTCACCCGCAGCTTTCGTCGTGTT 196642 Query 259974 TTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCG 260033 | ||| | ||||||| |||||||| || |||||||| |||||||||||| ||||| Sbjct 196641 TCCTGGTCACGATGAAGGATGATTCGATTGAAGGCATCTACGACACGCTCAAGACGTGCG 196582 Query 260034 CGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGG 260093 |||||||||||||| | ||||| || |||||||| | ||||| | ||||| | | Sbjct 196581 CGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCG 196522 Query 260094 GCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTT 260153 || ||||| | |||||||| |||||| | || |||||| | || |||||||| || || | Sbjct 196521 GCTCCTACATCGCGGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCT 196462 Query 260154 TTAACGACACGGCGCGCTACGTCGACCA 260181 ||| |||| ||||||||||||||||| Sbjct 196461 ACAACAACACCGCGCGCTACGTCGACCA 196434 Score = 89.7 bits (98), Expect = 7e-12 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATA 263230 |||||||||||| ||| ||||||||| |||||| | | ||| | | | || ||| Sbjct 195062 CGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACT-ATTATCGATC 195004 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 || ||||||| || | ||| |||||||| || ||||||||| | || | | || Sbjct 195003 TGTCGGCCGATCGAGGCGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTT-GTCG 194945 Query 263291 A-CCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAG 263349 | ||| ||| | | |||||||||||||| ||| | ||| || || || ||| Sbjct 194944 AGCCCAACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAG 194885 Query 263350 ACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGAT 263409 || ||||||||||| ||||||| || |||| | | || || | || |||||||| Sbjct 194884 ACGGGCATGTACTACTTGCGCACGCGCGCCGCCGTCGGTGCGATCAAGTTTACCGTCGAC 194825 Query 263410 CA 263411 || Sbjct 194824 CA 194823 >seq60 Length=1146088 Score = 102 bits (112), Expect = 1e-15 Identities = 169/238 (71%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| | |||| ||||||| ||||||||||||||||| ||| | ||| Sbjct 223643 GATCTGGGCACAGTACAAGAAAG-CCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 223701 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | | |||||| ||| | |||||||||| | |||||| Sbjct 223702 TGTCCAAGGATATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 223761 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||||| |||||||||||| ||| |||||||| ||||||| ||| || Sbjct 223762 CGCACGTCCTCGCC-TTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAG 223820 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| || || ||| Sbjct 223821 CGATTCTCTG-GTGAGGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 223877 >seq100 Length=1849583 Score = 96.9 bits (106), Expect = 5e-14 Identities = 136/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||| |||||| | ||| ||| | |||||||| ||||||||||| |||| || ||| Sbjct 201985 CTCGAACAAGGCGATGCTCATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGTATCTC 202044 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCT-CCAACAAGCGCAAC---ACGATCGGCACGCGCG 725073 | |||||| || || ||| || |||| | ||| |||||| | |||||| Sbjct 202045 CCTCGAGGCTT----CCAAGCTCGCGACCTACAACCACAAGGCGACGATCTCCTCGCGCG 202100 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 ||||||||||| | || ||| ||||| | | || ||| || ||| ||||||| |||| | Sbjct 202101 AGATCCAGACCTCGGTTCGCTTGATCCTCCCTGGAGAATTGTCCAAGCACGCCATCTCGG 202160 Query 725134 AGGGCACCA 725142 | ||||||| Sbjct 202161 AAGGCACCA 202169 Score = 96.9 bits (106), Expect = 5e-14 Identities = 162/229 (71%), Gaps = 14/229 (6%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | ||||| || |||||| |||| | ||| || |||||| | ||| Sbjct 520291 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 520238 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||| | |||||||| ||||||||||| | || |||||| | ||| || ||| | Sbjct 520237 GATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCACCCTCGAAGC--GTC--CA 520182 Query 725036 GGCGCGCT-CCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGC 725091 || ||| || |||| | ||| ||| | | || ||||||||||||||| | || | Sbjct 520181 AGCTCGCGACCTACAACCACAAGGCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTCC 520122 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 520121 GATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 520073 Score = 96.9 bits (106), Expect = 5e-14 Identities = 162/229 (71%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | ||||| || |||||| |||| | ||| || |||||| | ||| Sbjct 1291829 CAAGGTGTTGAAGCAAGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 1291882 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 |||| | |||||||| ||||||||||| | || |||||| | ||| || ||| | Sbjct 1291883 GATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCATCACCCTCGAAGC--GTC--CA 1291938 Query 725036 GGCGCGCT-CCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGC 725091 || ||| || |||| | ||| ||| | | || ||||||||||||||| | || | Sbjct 1291939 AGCTCGCGACCTACAACCACAAGGCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTCC 1291998 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 1291999 GATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 1292047 >seq73 Length=1824528 Score = 91.5 bits (100), Expect = 2e-12 Identities = 167/241 (69%), Gaps = 13/241 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| |||||| || ||| || || | ||||||||| ||||||| ||| |||||| Sbjct 1428203 GATTTGGGCCATGTACAAACAAGCCCAAG-CGTCCTTTTGGTCCGCCGAAGAGATCGACC 1428261 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC-------GCTGAGCGACGACGAGCGCCATTTC 1455887 ||||| |||| ||||| | || | ||| | | ||||||| ||| | || Sbjct 1428262 TCGGCAACGAC---CTCCAC-GACTGGCACCACAAGCTCAACAACGACGAACGCTACTTT 1428317 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||| |||||| || |||||||| ||||| ||||| ||||| |||| Sbjct 1428318 ATCGCCCACGTGCTCGCC-TTCTTCGCCGCTTCGGATGGGGTCGTGAATGAGAATCTGGT 1428376 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || | || || ||||| || || | ||||| | | ||||| ||||| ||||| Sbjct 1428377 CGAGAGGTTCTCGAGCGAGGTGCAGTTCGCCGAGGCGAGGTGCTTTTATGGGTTTCAGAT 1428436 Query 1456008 C 1456008 | Sbjct 1428437 C 1428437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177797021579814