Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq75 158 2e-33 seq60 113 6e-20 >seq75 Length=589559 Score = 158 bits (174), Expect = 2e-33 Identities = 275/395 (70%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| |||||||| | || ||| ||| || ||||| ||| | || ||| Sbjct 48495 CCGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATC 48554 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| || ||| ||||||||| | ||| | || || Sbjct 48555 CGAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTG 48614 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||||| ||||| ||| |||||| ||| ||| | ||||| Sbjct 48615 GATCGTCAAGAACTACCGCGAGTCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAA 48674 Query 9335 CCATGAATCACCGAGACGAGGT-GCAGACTTTGTGACCATGAAGAT-TACCGAGGGTATC 9392 ||| || || ||| | || ||| ||| |||||| || | |||||| | |||| | | || Sbjct 48675 CCACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATCTCCCGA-GCTGTC 48732 Query 9393 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 9452 | ||| | ||| || |||| | | | | | || || || | || || | Sbjct 48733 GCCGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGT 48792 Query 9453 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 9512 |||||||| |||||| ||||| || || | ||||||| | ||||| || ||||| Sbjct 48793 GATTGGGGACACGCGCGCGACTACGTCGAGGGTATGTGGATGATGCTGCAGCAAGACACC 48852 Query 9513 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 9547 ||||||| | ||| | || |||||||||||||| Sbjct 48853 CCCGACGACTTTGTCCTCGCGACGGGTGAGACCCA 48887 >seq60 Length=1146088 Score = 113 bits (124), Expect = 6e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 9155 CCGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAA 9214 |||| |||| || ||||| |||| ||| ||| || ||||| ||| | || || Sbjct 407718 CCGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTC 407777 Query 9215 CGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTG 9274 |||| ||| ||||||||||| |||||| |||||||||| | ||| | || || Sbjct 407778 CGAGACGACTCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTG 407837 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | ||||||| || ||||||||||| |||| ||| |||||| ||| ||||||||||| Sbjct 407838 GATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAA 407897 Query 9335 CCATGAATCACC 9346 ||| || || || Sbjct 407898 CCACGAGTCCCC 407909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030845991200