Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq109 118 3e-21 seq73 104 7e-17 seq65 98.7 3e-15 >seq109 Length=1431625 Score = 118 bits (130), Expect = 3e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | || || || ||||| || || || || | Sbjct 625546 TTTGCATACCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 625487 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || || ||||| ||||||||||| || ||||| || | Sbjct 625486 AATCGGCGAGCGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGT 625427 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || |||||||| || || || || || || || |||| || || | Sbjct 625426 CTGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGG 625367 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || || || || ||||| Sbjct 625366 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625312 Score = 118 bits (130), Expect = 3e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | || || || ||||| || || || || | Sbjct 625774 TTTGCATACCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 625715 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || || ||||| ||||||||||| || ||||| || | Sbjct 625714 AATCGGCGAGCGTGCGGCCATCCTCGAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGT 625655 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || |||||||| || || || || || || || |||| || || | Sbjct 625654 CTGGGGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGG 625595 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || || || || ||||| Sbjct 625594 ACTCGACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625540 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || ||||| || || || || || || | | || || ||||| || | Sbjct 625974 CAAG-TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGA 625916 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| || ||||| || || || ||||| || || || ||||| | Sbjct 625915 GCTGCTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGGA 625856 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || |||| || || | || || || || || | ||||| | Sbjct 625855 TCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCTTGC 625796 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || || || || ||||| Sbjct 625795 CGGTCAGGGTCTTGACGAAGATTTGCAT 625768 Score = 100 bits (110), Expect = 9e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | | || | || || || ||||| || || || || | Sbjct 870625 TTTGCATACCCCCACGGAGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGT 870566 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || || || || ||||||||||| | || || || | Sbjct 870565 AATCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGT 870506 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| ||||| || || ||||| || | || || || ||||||| || || | Sbjct 870505 CTGGGGGAATGCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACG 870446 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| || || || || || || || |||||||| Sbjct 870445 ACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 870391 Score = 96.9 bits (106), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || || || ||||| | | || || ||||| || | Sbjct 870369 CAAG-TGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGA 870311 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| | || || || || || ||||| ||||| || || |||| Sbjct 870310 GCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAA 870251 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | || || || ||||||| || || | || || || || || | ||||| | Sbjct 870250 TCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGTCTTGC 870191 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || || |||||||| Sbjct 870190 CCGTAAGCGTCTTAACGAAGATCTGCAT 870163 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || || || ||||| | | || || ||||| || | Sbjct 870825 CAAG-TGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTCGA 870767 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || ||||||||||| | || || || || || ||||| ||||| || || |||| Sbjct 870766 GCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAA 870707 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || | || || || ||||||| || || | || || || || || | ||||| | Sbjct 870706 TCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGTCTTGC 870647 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || || || ||||| Sbjct 870646 CCGTAAGCGTCTTGACGAAGATTTGCAT 870619 >seq73 Length=1824528 Score = 104 bits (114), Expect = 7e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| ||||| || || ||||| | Sbjct 212643 ACCACCACGCAGACGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGC 212702 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || |||||||| ||||||||||| || || || Sbjct 212703 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 212762 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || || || || | || || || || |||| || || | || || Sbjct 212763 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 212822 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | ||||| || || || || || ||||| || |||| Sbjct 212823 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 212869 >seq65 Length=1908199 Score = 98.7 bits (108), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || || ||||| ||||| || || ||||| | | || || ||||| | Sbjct 1743334 GACCAAG-TGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCCATCCT 1743392 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || || |||||||| ||||||||||| || || || || ||||| || || | Sbjct 1743393 CGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTT 1743452 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || | || || || || |||| || || | || || || || || | |||| Sbjct 1743453 GGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCT 1743512 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 | || || || || || ||||| || ||| Sbjct 1743513 TGCCCGTAAGAGTCTTGACAAAGATTTGC 1743541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515251546113041