Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq62 273 2e-68 seq73 134 2e-26 >seq62 Length=232403 Score = 273 bits (302), Expect = 2e-68 Identities = 521/765 (68%), Gaps = 2/765 (0%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || ||||| ||| ||||| | ||| ||| | ||||| Sbjct 196785 TCATGCGTGTCGCCGTTGGCATCCATGGTCACGACATCGAGCGCGTCTTGCAATCGTACA 196726 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | ||||| || |||||| |||| || || ||||| || || ||| Sbjct 196725 ACCTCATGTCTGAGCGCTACTTCACCCACGCCTCGCCGACACTCTTCAATGCCGGAACGC 196666 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| || |||||||| ||||||||||||| ||||| || |||| Sbjct 196665 CTCACCCGCAGCTTTCGTCGTGTTTCCTGGTCACGATGAAGGATGATTCGATTGAAGGCA 196606 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| ||| || | |||||||||| | |||||||||||| | Sbjct 196605 TCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 196546 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | ||| ||| ||||||||| | | | | Sbjct 196545 GCATCCACAACATCCGCGCGACCGGCTCCTACATCGCGGGCACGAACGGCTACTCGAACG 196486 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||| |||| ||||||||| || || |||||| |||| ||||| Sbjct 196485 GCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCA 196426 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| |||||||||||||| |||||||| ||| | | |||| Sbjct 196425 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCATGGCACGCTGACGTCTTCGAGT 196366 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || || | ||| ||||| || || | Sbjct 196365 TCCTGGACCTTCGCAAGAACCATGGCAAGGAGGAAGTCCGCGCTCGTGATCTCTTCTTTG 196306 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||||||| || || || ||| | || ||| | || |||||| ||| Sbjct 196305 CGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGGCCGCCGGCGAGTGGCCCCTCT 196246 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| || |||||||||||| | ||||| || || ||||| || ||| Sbjct 196245 TCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAAGAGTTCCGCGCCTTGT 196186 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| | |||| | |||||||| |||||||| | || |||| | | ||| Sbjct 196185 -TCGAAAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGATCCCCGCGCAAAAACTTTGG 196127 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | || || || | |||||| || || || | || | |||| |||||| || | Sbjct 196126 TACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCCTTCATGCTCTACAAAGACGCC 196067 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 | ||| | || ||||| |||||| | ||| ||||| ||| Sbjct 196066 GCGAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCG 196022 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | | || || || Sbjct 195059 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGATCTGTC 195000 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || ||||| || || | |||||||||||| || || || |||||| | || || || Sbjct 194999 GGCCGATCGAGGCGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTTGTCGAGCCC 194940 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| | | | ||||||||||| ||||| |||||| ||||| |||||||| Sbjct 194939 AACGATGGCGCAACTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGG 194880 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 |||||||| |||| || |||||| Sbjct 194879 CATGTACTACTTGCGCACGCGCGCC 194855 >seq73 Length=1824528 Score = 134 bits (148), Expect = 2e-26 Identities = 288/425 (68%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || ||||| | || ||||||| | ||| || | || ||| ||| Sbjct 1165450 ATCCCGTTCCAATACCCTCCGAGCCATTGACCAAAGCCATAGGAATGATGGGGATGTACC 1165509 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | ||| || ||||| | | ||||| | ||| | ||||| | Sbjct 1165510 AAGACGGCTCGATGCTTTGGCCATCATCGTTGAGGTATTCGAGCACGCTGTCATCAGCGG 1165569 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTG-- 152049 ||| ||| | | || || || ||| | | ||| |||||||||||| | |||| | Sbjct 1165570 GATGGAAGACGCTACGCGTGAT-GGA-TGATACGTTCGTGAAGATGTAAC--GAGCCGAA 1165625 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 ||||| || || |||||| ||| ||||| ||||| || || || ||||| | |||| Sbjct 1165626 GCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCGAGAATGTTG 1165685 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 |||||||||| || ||||| | || |||| | || ||||| |||| |||| | Sbjct 1165686 AGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATT 1165745 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || ||||||| ||||| |||| ||| || |||| || | ||||| || Sbjct 1165746 TCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATC 1165805 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| ||||| || ||||| || || | | |||||||| || ||||| || Sbjct 1165806 TCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTGACCCGGTTTGAAC 1165865 Query 152290 CCGTC 152294 || || Sbjct 1165866 CCATC 1165870 Score = 102 bits (112), Expect = 9e-17 Identities = 182/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || || || ||||| ||||||||||| ||||| Sbjct 1165605 GTGAAGATGTAACGAGCCGAAGCCGCGTCTTTACCACCTTGCAGACGCGTACCAAATTGA 1165664 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| |||||||||| || || || | ||| |||| | || Sbjct 1165665 CCGTTCGGGTCGAGAATGTTGAGGTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATG 1165724 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||||| | ||| ||||| || || ||||||| ||||| || ||||| || Sbjct 1165725 ATGGTGCCTTGCAAACTCATTTCACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCG 1165784 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||| || | ||||| || || ||||| || ||||| ||| | | | ||| Sbjct 1165785 CCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 1165844 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 ||||| |||| || || | ||||| Sbjct 1165845 TTGCGTTGACCCGGTTTGAACCCATC 1165870 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| | |||||| ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 1167615 GTTGGCCAACTTGGCTCCGTAACCGTTCCTACCACCGGTGACCTTCTCCTCCTCGTCGTC 1167674 Query 119143 GTAGTTGGAGCTGGTCAAAAG-GTGCCCAAAGATGAGCTCGGGGATCCAAA 119192 |||||||| ||| | || ||| |||||||| | || |||||||||| Sbjct 1167675 ATAGTTGGAAGAGGTAAGCAGAGTG-CCAAAGATCATTTCCGGGATCCAAA 1167724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214994490600