Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12-
23] 147 sequences; 31,827,297 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq73 102 7e-17
seq65 100 2e-16
seq109 98.7 9e-16
>seq73
Length=1824528
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| ||||| || || |||||||| || || || | || ||
Sbjct 212661 CACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCGAGAGTGCGGCCATCCTC 212720
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| ||||| || ||||| |||||||| | || | || || |||||
Sbjct 212721 GAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTG 212780
Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | ||| ||| |||||| || || | ||||| | |
Sbjct 212781 GATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCT 212839
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283
| ||||| || || || |||||||||||||
Sbjct 212840 TGCCCGTGAGGGTCTTGACAAAGATTTGCA 212869
>seq65
Length=1908199
Score = 100 bits (110), Expect = 2e-16
Identities = 160/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| | ||||| || || || ||| ||||| || || ||||||||
Sbjct 1743316 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGC 1743375
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176
|| || || | || || ||||| ||||| ||||| || ||||| |||||||| | ||
Sbjct 1743376 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 1743435
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCA 39235
| || || ||||| ||| || |||| ||| | | | ||| ||| |||||| |
Sbjct 1743436 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATCGTGTCGGACGACTCGA 1743494
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282
| || | ||||| | || ||||| || || || ||||||||||||
Sbjct 1743495 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 1743541
>seq109
Length=1431625
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || |||||||| || || || | || ||
Sbjct 625521 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 625462
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||| ||||| || || || || ||||| | ||| | || ||| || |||
Sbjct 625461 GAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTATCCTG 625402
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | ||| || ||||| || || | |||||| | |
Sbjct 625401 GATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 625343
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || || || |||||||||||
Sbjct 625342 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625312
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || |||||||| || || || | || ||
Sbjct 625749 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 625690
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||| ||||| || || || || ||||| | ||| | || ||| || |||
Sbjct 625689 GAGCTGTTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTATCCTG 625630
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | ||| || ||||| || || | |||||| | |
Sbjct 625629 GATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 625571
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || || || |||||||||||
Sbjct 625570 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625540
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || || ||||| || || || | || ||
Sbjct 625977 CACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTC 625918
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| ||||| || || || || ||||| | ||| | || ||| ||||||
Sbjct 625917 GAGCTGCTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTG 625858
Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| ||| | | | ||| || ||||| || || | |||||| | |
Sbjct 625857 GATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAAGACTCGACCTCGAGCGTGATCGTCT 625799
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || || || |||||||||||
Sbjct 625798 TGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625768
Score = 93.3 bits (102), Expect = 4e-14
Identities = 151/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || ||||| ||| || || || || |||||||| || || || | || ||
Sbjct 870828 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCATCCTC 870769
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| ||||| || | ||||| ||||| | ||| | || || ||||| |
Sbjct 870768 GAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT-T 870710
Query 39195 GATTTTCTGT-TTGAGCGTCGCCAC-CGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252
|| | | || |||| ||| | || ||| || |||||| || || | ||||| |
Sbjct 870709 GAATCTTGGTCTTGA-CGTTGTCAATCGTGTCCGACGACTCGACCTCGAGGGTGATCGTC 870651
Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| ||||| ||||| || || |||||||||||
Sbjct 870650 TTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 870619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429544830442211
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |