Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900015965.1_202016-12- 23] 147 sequences; 31,827,297 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq109 152 5e-32 seq73 105 6e-18 seq65 102 8e-17 >seq109 Length=1431625 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| || ||||| ||||||||| ||||| ||||||| | Sbjct 625994 CCGCCTCGGAGACGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 625935 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || ||||| || |||||||| | |||| Sbjct 625934 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGTCGTTGTTGGTCTGGGGGA 625875 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | ||| | | | ||||| ||||| || Sbjct 625874 ATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 625816 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || ||||| ||||| ||||| || ||||| Sbjct 625815 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 625768 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| ||||||| || ||||| ||||||||| ||||| || |||| | Sbjct 870389 CCACCGCGGAGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 870330 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || |||| ||||||||||| | |||| Sbjct 870329 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 870270 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || | | ||| | | | ||||| |||||| || Sbjct 870269 ATGCCTTCCTTGT-CTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGAC 870211 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || ||||| |||||||| ||||| |||||||| Sbjct 870210 CTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTAACGAAGATCTGCAT 870163 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||||||| ||||||||| ||||| || |||| | Sbjct 625310 CCACCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 625251 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| |||| || |||||||| | |||| Sbjct 625250 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGTTGTTGGTCTGGGGGA 625191 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| || | || || | ||| | | | ||||| ||||| || Sbjct 625190 ATGCCCTCCTTATCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 625132 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || ||||| ||||| |||||||| ||||| Sbjct 625131 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 625084 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || ||||| ||||||||| ||||| || |||| | Sbjct 870617 CCCCCACGGAGACGCAACACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 870558 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || |||| ||||||||||| | |||| Sbjct 870557 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 870498 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || | | ||| | | | ||||| |||||| || Sbjct 870497 ATGCCTTCCTTGT-CTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGAC 870439 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || ||||| |||||||| ||||| |||||||| Sbjct 870438 CTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 870391 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||||||||| ||||| || |||| | Sbjct 870845 CCCCCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 870786 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || |||| ||||||||||| | |||| Sbjct 870785 AGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGTTGGTCTGGGGGA 870726 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| | || | | ||| | | | ||||| |||||| || Sbjct 870725 ATGCCTTCCTTGT-CTTGAATCTTGGTCTTGACGTTGTCAATCGTGTCCGACGACTCGAC 870667 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || ||||| |||||||| ||||| || ||||| Sbjct 870666 CTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 870619 >seq73 Length=1824528 Score = 105 bits (116), Expect = 6e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||| || ||||| || |||| | Sbjct 212644 CCACCACGCAGACGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGCG 212703 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||||||||| || || || || || ||||| | || Sbjct 212704 AGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGG 212763 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| ||| | | | |||||| |||||| || Sbjct 212764 ATGCCTTCCTTGTCTTGGATCTTGGTCTT-GACGTTGTCGATCGTGTCGGACGACTCGAC 212822 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861 ||| | || || || || ||||| || ||||| || || || |||| Sbjct 212823 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 212869 >seq65 Length=1908199 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||| || || || |||||| || ||||| || |||| Sbjct 1743316 GCCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAATCGGC 1743375 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || ||||||||||||||||| || || || || || ||||| | || Sbjct 1743376 GAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGG 1743435 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| ||| || ||| ||| | | | |||||| |||||| | Sbjct 1743436 GATGCCTTCCTTGTCTTGGATCTTGGTCTT-GACGTTGTCGATCGTGTCGGACGACTCGA 1743494 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || ||||| || ||||| || || || ||| || Sbjct 1743495 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGCCTG 1743544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303150516400