Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2123 127 3e-24 >seq2123 Length=425399 Score = 127 bits (140), Expect = 3e-24 Identities = 346/527 (66%), Gaps = 6/527 (1%) Strand=Plus/Minus Query 33603 CCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 33662 || ||||| | ||| || |||||||| ||| | || ||||| ||||| || || ||||| Sbjct 273839 CCTTCGTCACGACTGATCAATTCGTTGGAATAGGTCAGTCCTGGCATAAGACCTCGCTTC 273780 Query 33663 TTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 || | ||||||||||||||| || || ||||| || |||||||| || || ||||| || Sbjct 273779 TTTATCCAAAATATGGAAGCAAAGGAGCCGGAGAAAAAGATTCCCTCCACCGCAGCGAAA 273720 Query 33723 GCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCG 33779 || | | | || || || | | || |||||| ||||| || Sbjct 273719 GCCACCAAACGTTCAGCAAAAGATGTTTGTTTATCCGATATCCAGCGGATTGCCCAGTCA 273660 Query 33780 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTA 33839 |||||| | | ||||| || |||||||| || | ||| ||||| | ||| | Sbjct 273659 GCCTTCCGTCGGATGCAAGGAATGGTTTCTATCGCGTCAAACAGATATTGCCGTTCGGTT 273600 Query 33840 CTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATG 33899 ||||| | || || || || | |||| || || || || |||||||| || Sbjct 273599 GGGTCTTTGATGTAGGTGTCTATGAGAAGAGAGTATGCCTCGGAGTGGATGTTTTCCATC 273540 Query 33900 GCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGT 33959 || || || || || ||||||| || || | | ||||| || | |||| ||| Sbjct 273539 ATAATTTGGAAACCATAAAAACATCGCGCTTCTGCCACTTGCACCTCGTTTGAAAACCGT 273480 Query 33960 TCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTT 34019 ||| ||| || || |||||||||||||| || || || || || | || | | Sbjct 273479 TCTACTAGGTTCTCGTTCACTATTCCATCTGACGCAGCGAAGAAAGCAAGAACCCGGGAT 273420 Query 34020 ATAAAATATTTTTC-GTCTGGTGTTA--GTTTATTCCAATCATTGATATCTTTAGATATA 34076 | |||||| ||| | | || | | | | ||||| || | | || ||||||| Sbjct 273419 ACGAAATATCGTTCACTGTCGTTTAAACGGTGGTTCCAGTCCATCAAGTCGTTAGATAAG 273360 Query 34077 TCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 || | |||||| | ||||| ||||| || ||||| ||| ||||| Sbjct 273359 TCTATTTCTTCGGCAGTCCAGAATGACGCTTCTGCTCGTTTGTACAT 273313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629797469454960