Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2123 105 6e-18 >seq2123 Length=425399 Score = 105 bits (116), Expect = 6e-18 Identities = 276/412 (67%), Gaps = 13/412 (3%) Strand=Plus/Minus Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 ||||| || |||||| |||||||| | ||| || | ||| || ||| | || | ||| Sbjct 273857 GCAAACTCTGTATGTAACCCTTCGTCACGACTGATCAATTCGTTGGAATAGGTCAGTCCT 273798 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 ||||| | ||||| || |||||||||||||| | |||||| || || || || || ||| Sbjct 273797 GGCATAAGACCTCGCTTCTTTATCCAAAATATGGAAGCAAAGGAGCCGGAGAAAAAGATT 273738 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATC 11809 |||||||| || || || || || | | ||| || | ||||| | |||||| Sbjct 273737 CCCTCCACCGCAGCGAAAGCCACCAAACGTTCAGCAAAAGATGTTTGTTTATCCGATATC 273678 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 || | ||||| ||||| ||| | | ||| || |||||||| |||| ||| Sbjct 273677 CAGCGGATTGCCCAGTCAGCCTTCCGTCGGATGCAAGGAATGGTTTCTATCGCGTCAAAC 273618 Query 11870 AAATGCATT--TTTTCTATATTATCTCTTACATATGTATCTAT--TAATAAACTATACAT 11925 | || ||| ||| | ||| | | || || ||||| || | | ||| | Sbjct 273617 AGAT--ATTGCCGTTCGGTTGGGTCTTTGATGTAGGTGTCTATGAGAAGAGAGTATGC-- 273562 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 || || || || |||||||| ||||| || ||||| |||||||| || |||| || Sbjct 273561 CTCGGAGTGGATGTTTTCCATCATAATTTGGAAACCATAAAAACATCGCGCTTCTG-CCA 273503 Query 11986 C-TGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATC 12036 | || || || |||| | ||| ||| ||||| || || || ||||| Sbjct 273502 CTTGCACCTCGTTTGAAAACCGTTCTACTAGGTTCTCGTTCACTATTCCATC 273451 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || |||||||| || | || ||||| | || || |||||||| || || || ||| Sbjct 271646 CAAGCAAAATCGGTGTGCATGCCCTCGTCACGGCTAATGAGTTCATTGGAGAACGTCAAT 271705 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 ||||||||||| || || || || ||||| || |||||||| || || || || ||||| Sbjct 271706 CCGGGCATCAAACCACGCTTCTTCATCCAGAAAATAGCAGCGAACGACCCCGAGAAGAAG 271765 Query 11750 ATTCCCTCCACAGCTGCAAATGCTAC 11775 || ||||| || || || || || || Sbjct 271766 ATACCCTCGACGGCAGCGAAGGCAAC 271791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468509824776080