Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2123 179 5e-40 seq2416 116 5e-21 >seq2123 Length=425399 Score = 179 bits (198), Expect = 5e-40 Identities = 352/513 (69%), Gaps = 18/513 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| | ||||| || ||||| | ||||||| | |||||| Sbjct 272202 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCATTCTGGACCGCCGAAGAGATGGATCTG 272143 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || |||||| || |||| ||| | | || ||| |||| ||||| | || || || Sbjct 272142 TCGAAGGACTTGCACGACTGGAACAACCGCATGAACGAAAACGAGCGTCATTTCATCTCA 272083 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | || ||||| |||| || ||||| || |||||||| ||||| || || || Sbjct 272082 CACGTCCTCGCATTCTTCGCCGCTTCTGATGGGATTGTCAACGAGAATCTCGTCGAG-CG 272024 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 |||||| | || || | | || | | |||||| ||||| |||||||||||||| Sbjct 272023 TTTCTCTAATGAAGTGCAGGCTGCTGAAGCGCGGTGCTTCTACGGGTTCCAAATCATGAT 271964 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCC 125314 |||||| | ||||| |||| ||||| || || |||| |||||| || || Sbjct 271963 GGAGAACATTCACTCTGAAACATACTCACTCCTCATCGACACCTACATTAAAGATGCTCG 271904 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA----A 125370 ||||| ||||| ||||| | || | || || | || | ||| || | Sbjct 271903 CCAACGGGAACAC---CTCTTCGATGCCGTTGAAACCATCCC----CTGCGTCAAGCGCA 271851 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG-TCTTCGTACGCCGACAGACTG 125429 |||| | |||| |||| |||||| || ||| | || | | || | ||| Sbjct 271850 AGGCCGACTGGGCTCTTCGATGGATCTCCGA-TACACGCTCGATCTTTGGTGAGCGTCTG 271792 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || ||||| ||||| ||||| |||||||| ||||| || || || || || ||| Sbjct 271791 GTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCTCGGGGTCGTTCGCTGCTATTTTCTGG 271732 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 | |||||||| || | ||||||||| ||||| Sbjct 271731 ATGAAGAAGCGTGGTTTGATGCCCGGATTGACG 271699 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 125685 CTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTG 125744 || || |||||| |||| || |||||| ||| || ||||| ||||||| |||||||| Sbjct 271493 CTCCCAGTCAGCTTGATCGGGATGAACGCCAAACTTATGTGTCAGTACATCGAGTTTGTC 271434 Query 125745 GCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTT 125804 || || || || || | ||| | | |||| | |||||| || ||| ||||| Sbjct 271433 GCCGACCGCCTGCTTGTTGCATTGGGTAACGACAAGGTCTACAACAGCACGAACCCCTTC 271374 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || |||||| | || || || |||| ||||||||||| || |||||| Sbjct 271373 GACTTCATGGATATGATCTCGCTGCAGGGCAAGACCAACTTCTTTGAGAAG 271323 >seq2416 Length=74831 Score = 116 bits (128), Expect = 5e-21 Identities = 377/580 (65%), Gaps = 14/580 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| ||||||||||||| || | || || || ||||| | ||||| | ||||| Sbjct 66695 ATCTGGCAAATGTACAAAAAAGCAGAAGCATCATTCTGGACTGCGGAAGAAATGGATCTA 66754 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||| ||| || |||| ||| | | || ||| ||| | ||||| | || || || Sbjct 66755 TCCAAAGACTTGCACGACTGGAACAACCGCATGAATGACAACGAGCGTCACTTCATCTCT 66814 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 || | | || ||||| |||| || || || || || ||||| || || || ||| Sbjct 66815 CATGTCCTCGCTTTCTTCGCCGCTTCAGACGGCATTGTTAACGAAAACCTCGTGGAACGT 66874 Query 125199 TTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||||| | | |||| | || || | | || || ||||| ||||| |||||||| Sbjct 66875 TTCTCAAATGAAGTTCAGGCCGCC-GAAGCGCGTTGTTTCTACGGTTTCCAGATCATGAT 66933 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCC 125314 || || | || || || | ||||| || || |||| ||||| || || Sbjct 66934 GGAAAATATTCATTCCGAGACATACTCCCTCCTCATCGACACCTACATCAAAGACCCTCG 66993 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCT---ATACGTAAAAA 125371 ||||| ||||| ||||| | || | || || | || | | | ||| || Sbjct 66994 ACAACGCGAACAC---CTCTTCGATGCTGTTGAAACCATTCCTTGTGTCAAGCGT---AA 67047 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 |||| | |||| | || |||||| ||| | || | | || || | || || Sbjct 67048 GGCTGACTGGGCTCTCCGATGGATCTCGGACAAGCGTTCAACATTCGGTGAACGCCTTGT 67107 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || || || || ||||| ||||| ||||| || ||| || || |||||||| ||| | Sbjct 67108 CGCGTTTGCAGCGGTAGAAGGCATTTTCTTCTCCGGTTCATTCGCCGCCATCTTCTGGAT 67167 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 |||||||| || || ||||| || |||| | || ||| | || || ||||| Sbjct 67168 GAAGAAGCGAGGGCTGATGCCTGGCTTGACCTTCTCCAATGAGCTCATCAGCCGTGACGA 67227 Query 125552 GGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 |||| | ||| ||||||||| || || ||| || || Sbjct 67228 GGGCATGCACACCGACTTTGCCTGCCTTCTCTTTAGCCAC 67267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741035513895320