Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2123 150 2e-31 seq2416 82.4 7e-11 >seq2123 Length=425399 Score = 150 bits (166), Expect = 2e-31 Identities = 285/417 (68%), Gaps = 2/417 (0%) Strand=Plus/Minus Query 13166 TGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCT 13225 || || ||||| || | ||| || | ||||| ||| | || || || |||||||| ||| Sbjct 273845 TGTAACCCTTCGTCACGACTGATCAATTCGTTGGAATAGGTCAGTCCTGGCATAAGACCT 273786 Query 13226 CGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCT 13285 || || || ||||||||||| | |||||| || || || ||||| ||||| || || || Sbjct 273785 CGCTTCTTTATCCAAAATATGGAAGCAAAGGAGCCGGAGAAAAAGATTCCCTCCACCGCA 273726 Query 13286 GCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCC 13345 || || || | ||| | |||| || | | | | |||| | |||||| | ||| Sbjct 273725 GCGAAAGCCACCAAACGTTCAGCAAAAGATGTTTGTTTATCCGATATCCAGCGGATTGCC 273666 Query 13346 CAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttt 13405 |||| || || || | ||| || ||||||| |||| ||| | ||| | | Sbjct 273665 CAGTCAGCCTTCCGTCGGATGCAAGGAATGGTTTCTATCGCGTCAAACAGATATTGCCGT 273606 Query 13406 tCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACATTTCTGAATGAATATT 13464 || | |||| || || || ||||| | ||| | || || || || || || Sbjct 273605 TCGGTTGGGTCTTTGATGTAGGTGTCTAT-GAGAAGAGAGTATGCCTCGGAGTGGATGTT 273547 Query 13465 TTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTA 13524 ||||||| |||||||||||||||||||||| || |||| || || || ||| | Sbjct 273546 TTCCATCATAATTTGGAAACCATAAAAACATCGCGCTTCTGCCACTTGCACCTCGTTTGA 273487 Query 13525 AAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 ||| | |||| ||| ||| ||||| ||||| || || ||||| || |||||||| Sbjct 273486 AAACCGTTCTACTAGGTTCTCGTTCACTATTCCATCTGACGCAGCGAAGAAAGCAAG 273430 >seq2416 Length=74831 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| || ||||| || || || | || || ||||| || || || || | Sbjct 67251 CAGGCAAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTGGAGAAGGTCAAG 67192 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || ||||| |||||||| || || ||||| || || || || || ||||| || || || Sbjct 67191 CCAGGCATCAGCCCTCGCTTCTTCATCCAGAAGATGGCGGCGAATGAACCGGAGAAGAAA 67132 Query 13271 ATTCCTTCAACTGCTGCAAACGC 13293 || ||||| || ||||||||||| Sbjct 67131 ATGCCTTCTACCGCTGCAAACGC 67109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430968969106914