Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2206 150 4e-31 seq1986 122 2e-22 seq2123 114 3e-20 >seq2206 Length=69542 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | |||||| ||||| ||||| || |||||||| ||||| | |||||| Sbjct 41296 AAGCACGAGGTGAAGTGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTACGACCGTC 41355 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| || ||||| || || || | || || |||||||| || ||||| || || Sbjct 41356 CTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTC 41415 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | ||| ||| || || ||||| | || || || Sbjct 41416 CTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCCAAAGTGATCGT 41475 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || || || || |||||||| Sbjct 41476 CTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 41508 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| |||||||| || ||||| | || ||||| || || || || Sbjct 41084 GTAGACTCCTTCTGAATGTTATAGTCGGAAAGAGTACGCCCATCTTCGAGCTGCTTCCCG 41143 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||| || ||||| |||||||| || |||||||||||||| || Sbjct 41144 GCGAAAATGAGACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTTTGCCTTC 41203 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | || ||||| || ||||| |||||||| || || || Sbjct 41204 ACGTTGTCAATGGTGTCGGACGACTCGACCTCCAGGGTAATCGTCTTACCCGTGAGGGTC 41263 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 41264 TTGACGAAGATTTGCAT 41280 >seq1986 Length=559288 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || ||||| | ||| || || | || |||||| Sbjct 252937 GTCGACTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCATCCTCCAACTGCTTTCCA 252996 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||||||| ||||| ||||| || ||||| ||||| || || Sbjct 252997 GCAAAGATCAAACGCTGTTGATCAGGGGGTATGCCTTCCTTGTCCTGGATCTTGGCCTTG 253056 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || ||||| || ||||| ||||| || || || || Sbjct 253057 ACGTTGTCAATGGTGTCCGAAGACTCAACCTCAAGAGTAATGGTCTTTCCGGTGAGCGTC 253116 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 253117 TTGACAAAAATTTGCAT 253133 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || ||||| || || || || | || ||||| || ||||||||| Sbjct 253165 GTCGACTCTTTCTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCGAGCTGTTTTCCA 253224 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | || || ||||| || || ||||| || ||||||||||| || ||| Sbjct 253225 GCAAAAATAAGACGTTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTT 253284 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || || || || || || || || || | || Sbjct 253285 ACATTGTCGATGGTGTCCGAAGACTCGACTTCGAGCGTTATCGTTTTTCCGGTTAAAGTC 253344 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 253345 TTCACGAAGATTTGCAT 253361 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || ||||| ||||| || | ||| || || || || |||||| Sbjct 253668 GTGGATTCCTTCTGAATGTTGTAGTCCGATAGGGTACGACCATCCTCAAGCTGCTTTCCA 253727 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | ||||| || || || || ||||| || ||||| ||||| || || Sbjct 253728 GCAAAAATCAATCGTTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 253787 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | || ||||| || || || ||||| ||||| || || Sbjct 253788 ACGTTATCGATGGTGTCAGGCGACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGGGTC 253847 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 253848 TTGACGAAAATTTGCAT 253864 >seq2123 Length=425399 Score = 114 bits (126), Expect = 3e-20 Identities = 355/546 (65%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 |||||| | |||||||||| || | || || || ||||||| |||||| |||| | Sbjct 273304 ATATGGCGAATGTACAAACGAGCAGAAGCGTCATTCTGGACTGCCGAAGAAATAGACTTA 273363 Query 268793 TCTTATGACTTAATAGATTGGAAAAAT--TTAAAACCAGAAGAAAGAAGATTTA-TATCT 268849 ||| | ||||| || || ||||| | || |||| | | || | |||| |||| Sbjct 273364 TCTAACGACTTGATGGACTGGAACCACCGTTTAAACGACAGTGAACGATATTTCGTATCC 273423 Query 268850 TATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAG 268909 ||||||| || || || | ||||| || || ||||| || |||||||| | Sbjct 273424 CGGGTTCTTGCTTTCTTCGCTGCGTCAGATGGAATAGTGAACGAGAACCTAGTAGAACGG 273483 Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 || | | ||||| || | | ||||| |||||||||| || ||||| || || Sbjct 273484 TTTTCAAACGAGGTGCAAGTGGCAGAAGCGCGATGTTTTTATGGTTTCCAAATTATGATG 273543 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAAC 269029 ||||| || || || ||| ||| ||| | ||||| || || || | || | | Sbjct 273544 GAAAACATCCACTCCGAGGCATACTCTCTTCTCATAGACACCTACATCAAAGACCCAACC 273603 Query 269030 GAAAAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAA 269089 ||| | || || ||| | || ||| || || | || || |||| Sbjct 273604 GAACGGCAATATCTGTTTGACGCGATAGAAACCATTCCTTGCATCCGACGGAAGGCTGAC 273663 Query 269090 TGGGCTCT------GAAAT-GGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGC 269142 ||||| | || || |||||||| | | ||| | ||| | || || || Sbjct 273664 TGGGCAATCCGCTGGATATCGGATAAACAAA----CATCTTTTGCTGAACGTTTGGTGGC 273719 Query 269143 TTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAA 269202 ||| || || || || || || || || || || || ||||| | || |||||| | || Sbjct 273720 TTTCGCTGCGGTGGAGGGAATCTTTTTCTCCGGCTCCTTTGCTTCCATATTTTGGATAAA 273779 Query 269203 GAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG 269262 ||| |||| |||||||||||| | || | || ||||||||||| || | |||||||| Sbjct 273780 GAAGCGAGGTCTTATGCCAGGACTGACCTATTCCAACGAATTGATCAGTCGTGACGAAGG 273839 Query 269263 TTTACA 269268 ||||| Sbjct 273840 GTTACA 273845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151360678389356