Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2206 91.5 1e-13 seq1986 82.4 6e-11 >seq2206 Length=69542 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 |||||||| ||| |||||||||||||| |||| || || || ||||||| || || Sbjct 41306 TGAAGTGTAGACTCTTTTTGAATGTTGTAGTCAG-AAAGAGTACGACCGTCCTCGAGTTG 41364 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||| ||||| || || | | |||||||||| ||| || Sbjct 41365 CTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTT 41424 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | ||||| |||| ||||||| ||| | || || || ||||| || Sbjct 41425 GGCCTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCCAAAGTGATCGTCTTACCCGT 41484 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 41485 GAGGGTCTTGACGAAGATCTGCAT 41508 >seq1986 Length=559288 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || ||||||||||| | | | || || | ||||||| ||| Sbjct 252931 TGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGAGAGAGTG-CGACCATCCTCCAACTG 252989 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || |||||||| ||||| || | | |||||||||| || || Sbjct 252990 CTTTCCAGCAAAGATCAAACGCTGTTGATCAGGGGGTATGCCTTCCTTGTCCTGGATCTT 253049 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | ||||| || | |||||| ||| | || ||||| || ||||| Sbjct 253050 GGCCTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCAAGAGTAATGGTCTTTCCGGT 253109 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || |||||||| ||||| Sbjct 253110 GAGCGTCTTGACAAAAATTTGCAT 253133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421238072364557