Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1986 98.7 9e-16 >seq1986 Length=559288 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/212 (71%), Gaps = 5/212 (2%) Strand=Plus/Plus Query 94799 ACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 |||||| || | ||| || ||||| || | ||| |||||| | || || || ||| Sbjct 253427 ACCAAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAATCGG--AGAGGGTACGACCATCT 253484 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || ||||| ||||| | || || | | |||||| || || || ||||| || ||||| Sbjct 253485 TCGAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCC 253544 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||| ||| | ||| ||| || | ||||| |||| || ||||| Sbjct 253545 TGGATCTTGGCCTTTACGTTGTCGATAGTATCCGACGACTCGACCTCAAGTGTAATGGTC 253604 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||| ||||||||||||||||| Sbjct 253605 TTTCCGGTCAAAGTCTTCACAAAGATCTGCAT 253636 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||| | | || | || | ||| | || || || || || | Sbjct 253122 AAAAATTTGCATGCCTCCACGAAGACGGAGGACAAGGTGAAGGGTCGACTCTTTCTGGAT 253181 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||||| | || | ||| || ||||||||||| |||| || | | ||| Sbjct 253182 GTTATAATCGGAGAGGGTACGGCCATCTTCGAGCTGTTTTCCAGCAAAAATAAGACGTTG 253241 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || || || ||||| ||||| | ||| || ||||| || | ||| ||||| Sbjct 253242 CTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTC 253301 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | ||| || |||||||| || | ||| ||||| ||||| ||||| Sbjct 253302 CGAAGACTCGACTTCGAGCGTTATCGTTTTTCCGGTTAAAGTCTTCACGAAGATTTGCAT 253361 Query 95008 GC 95009 || Sbjct 253362 GC 253363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448276871492520