Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2123 129 7e-25 >seq2123 Length=425399 Score = 129 bits (142), Expect = 7e-25 Identities = 368/560 (66%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || |||||| ||| | |||||||| | ||||| | ||| ||||| ||||| | | Sbjct 271646 CAAGCAAAATCGGTGTGCATGCCCTCGTCACGGCTAATGAGTTCATTGGAGAACGTCAAT 271705 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| | |||||||| || | ||| || || | || || || || || ||||| Sbjct 271706 CCGGGCATCAAACCACGCTTCTTCATCCAGAAAATAGCAGCGAACGACCCCGAGAAGAAG 271765 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG-GCGC-TGTCATGT 32837 || || || || || || ||||||| || | ||| ||| | | || ||| | || Sbjct 271766 ATACCCTCGACGGCAGCGAAGGCAACCAGACGCTCACCAAAGATCGAGCGTGTATCGGAG 271825 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| ||||||| |||||||| || || || || || || || | |||| Sbjct 271826 ATCCATCGAAGAGCCCAGTCGGCCTTGCGCTTGACGCAGGGGATGGTTTCAACGGCATCG 271885 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 ||||| | | || | |||||||| || || || || | || || || Sbjct 271886 AAGAGGTGTTCCCGTTGGCGAGCATCTTTAATGTAGGTGTCGATGAGGAGTGAGTATGTT 271945 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || |||||||| || || ||||| || ||||||||||| | || || | | | Sbjct 271946 TCAGAGTGAATGTTCTCCATCATGATTTGGAACCCGTAGAAGCACCGCGCTTCAGCAGCC 272005 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || ||||| || | || || || | | ||| || || || || || ||| || || Sbjct 272006 TGCACTTCATTAGAGAAACGCTCGACGAGATTCTCGTTGACAATCCCATCAGAAGCGGCG 272065 Query 33078 AAAAACGCCAATACATGTTTTATAAAA------TATTTTTCGTCTGGTGTTAGTTTATTC 33131 || || || | || ||| || ||| | ||||||| | || | || ||| Sbjct 272066 AAGAATGCGAGGACGTGTGAGATGAAATGACGCTCGTTTTCGT-TCATG--CGGTTGTTC 272122 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 || || | | || || || | ||||| ||||| | ||||| ||||| || || ||| Sbjct 272123 CAGTCGTGCAAGTCCTTCGACAGATCCATCTCTTCGGCGGTCCAGAATGAGGCTTCGGCC 272182 Query 33192 TTTTTATACATATTCCAGAT 33211 || || ||||| | |||||| Sbjct 272183 TTCTTGTACATTTGCCAGAT 272202 Score = 105 bits (116), Expect = 8e-18 Identities = 345/533 (65%), Gaps = 6/533 (1%) Strand=Plus/Minus Query 32676 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 32735 |||| || ||||| | ||| || |||||||||||| | || ||||| ||||| || || Sbjct 273845 TGTAACCCTTCGTCACGACTGATCAATTCGTTGGAATAGGTCAGTCCTGGCATAAGACCT 273786 Query 32736 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 32795 ||||| || | |||||||||||| ||||| || || || || || ||||| || || || Sbjct 273785 CGCTTCTTTATCCAAAATATGGAAGCAAAGGAGCCGGAGAAAAAGATTCCCTCCACCGCA 273726 Query 32796 GCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCC 32852 || || || | | | || || || | | || |||||| ||| Sbjct 273725 GCGAAAGCCACCAAACGTTCAGCAAAAGATGTTTGTTTATCCGATATCCAGCGGATTGCC 273666 Query 32853 CAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttt 32912 || || |||||| | | ||||| || || ||||| || | ||| ||||| | | Sbjct 273665 CAGTCAGCCTTCCGTCGGATGCAAGGAATGGTTTCTATCGCGTCAAACAGATATTGCCGT 273606 Query 32913 tCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 32972 || | ||||| | || || || || | |||| || || || || |||||| Sbjct 273605 TCGGTTGGGTCTTTGATGTAGGTGTCTATGAGAAGAGAGTATGCCTCGGAGTGGATGTTT 273546 Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33032 || || ||||| || || || || |||| || || | | || || || | || Sbjct 273545 TCCATCATAATTTGGAAACCATAAAAACATCGCGCTTCTGCCACTTGCACCTCGTTTGAA 273486 Query 33033 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 || |||||| ||| || || ||||||||||| || || || || || || | || Sbjct 273485 AACCGTTCTACTAGGTTCTCGTTCACTATTCCATCTGACGCAGCGAAGAAAGCAAGAACC 273426 Query 33093 TGTTTTATAAAATATTTTTC-GTCTGGTGTTA--GTTTATTCCAATCATTGATATCTTTA 33149 | || |||||| ||| | | || | | | | ||||| || | | || ||| Sbjct 273425 CGGGATACGAAATATCGTTCACTGTCGTTTAAACGGTGGTTCCAGTCCATCAAGTCGTTA 273366 Query 33150 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 33202 |||| || | |||||| | ||||| ||||| || ||||| ||| ||||| Sbjct 273365 GATAAGTCTATTTCTTCGGCAGTCCAGAATGACGCTTCTGCTCGTTTGTACAT 273313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633611747537200