Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1986 136 3e-27 seq2206 104 2e-17 >seq1986 Length=559288 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||||||||| |||||| | || || ||||| || | | Sbjct 253361 ATGCAAATCTTCGTGAAGACTTTAACCGGAAAAACGATAACGCTCGAAGTCGAGTCTTCG 253302 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || ||||| |||||||| || || || || || || Sbjct 253301 GACACCATCGACAATGTAAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAG 253242 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || |||||| | || ||| ||| ||| |||||||||| ||| Sbjct 253241 CAACGTCTTATTTTTGCTGGAAAACAGCTCGAAGATGGCCGTACCCTCTCCGATTATAAC 253182 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 253181 ATCCAGAAAGAGTCGACC 253164 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | ||||| || || | |||||||| || || | | Sbjct 253133 ATGCAAATTTTTGTCAAGACGCTCACCGGAAAGACCATTACTCTTGAGGTTGAGTCTTCG 253074 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || |||||||| || || || || |||||| Sbjct 253073 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATACCCCCTGATCAA 253014 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||||| |||||| ||||| |||| ||||||||| Sbjct 253013 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACTCTCTCGGATTACAAC 252954 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 252953 ATCCAGAAGGAGTCGAC 252937 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| ||||| || || | || ||||| || || | | Sbjct 253636 ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATTACACTTGAGGTCGAGTCGTCG 253577 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | || || || || |||||||||||||| ||||| || || Sbjct 253576 GATACTATCGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 253517 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || || || || ||| | || ||| || ||| |||||||||||||| Sbjct 253516 CAACGTCTTATTTTCGCTGGAAAGCAGCTCGAAGATGGTCGTACCCTCTCCGATTACAAC 253457 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 253456 ATCCAGAAGGAGTCAAC 253440 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || || ||||||| || || || | | Sbjct 253864 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGCCT 253805 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || |||||||| || || || ||||| ||| Sbjct 253804 GACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 253745 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| || || ||| | |||||| || ||| | || || |||||| Sbjct 253744 CAACGATTGATTTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACCCTATCGGACTACAAC 253685 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || |||||||| Sbjct 253684 ATTCAGAAGGAATCCAC 253668 >seq2206 Length=69542 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| ||| ||||| | || ||||| | || Sbjct 41508 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACTTTGGAGGTGGAGTCTTCC 41449 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || ||||| |||||||| || ||||| || || || Sbjct 41448 GACACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAG 41389 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| || | ||||| || || | || || |||||| Sbjct 41388 CAACGTCTGATCTTCGCTGGCAAGCAACTCGAGGACGGTCGTACTCTTTCTGACTACAAC 41329 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||||||||| || || Sbjct 41328 ATTCAAAAAGAGTCTAC 41312 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 || || || ||||||||||| || || || ||||| || ||| | ||||| |||||| Sbjct 41915 ATCCCCCCTGATCAACAACGACTCATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCACC 41856 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 | || |||||||||||||| ||||| || ||| | ||| | || ||||| Sbjct 41855 CTTTCTGATTACAACATTCAGAAAGAGTCGACCCTCCATCTTGTCTTGCG 41806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419714919832705