Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2123 95.1 2e-14 seq2019 86.0 1e-11 seq1573 84.2 4e-11 >seq2123 Length=425399 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || || ||||| || ||||| || | |||||||| ||| ||||| | |||||| Sbjct 271309 TAGTCCGAGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATG 271368 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGG 251664 |||||||||||||| ||| ||||| |||| | || | ||| || | | |||| Sbjct 271369 AAGTCGAAGGGGTTCGTGCTGTTGTAGACCTTGTCGTTACCCAATGCAACAAGCAGGCGG 271428 Query 251665 TCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCA 251716 || || |||||||| | ||||| | ||| |||| | |||||| || |||| Sbjct 271429 TCGGCGACAAACTCGATGTACTGACACATAAGTTTGGCGTTCATCCCGATCA 271480 >seq2019 Length=172032 Score = 86.0 bits (94), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| | ||||| || || || |||| |||| | || || | ||||| Sbjct 149514 GGTCCCAACGGTTCTGGTAAATCCACTCTCGTCAAGCTCCTCATCGGTGACATGGAGGCC 149573 Query 280239 ACTGAGGGGTCCG---TTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCAC 280295 | |||| | | |||||||| |||||| || || | ||| || ||||| ||| Sbjct 149574 AACAAGGGTGGTGAAATCTGGAAGCACCCCAACTTGGTCATTGGTTATGTTGCTCAACAC 149633 Query 280296 GCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 ||||||||||||||||| ||||||| |||| |||||| Sbjct 149634 GCTTTCCACCACATCGATCACCACCTTGACAAGACTCC 149671 >seq1573 Length=133326 Score = 84.2 bits (92), Expect = 4e-11 Identities = 229/343 (67%), Gaps = 16/343 (5%) Strand=Plus/Minus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATA-GACTTCAGTGTGGG 293090 || || | ||||||||||||| | ||||| |||| |||| ||| || || || Sbjct 59948 GTCTTCAAACCCTTCTTCCATCCATAGAAGTGCATGCTAGTCAACTGACC-CATCGTTGG 59890 Query 293091 AGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGC 293150 | |||||| || ||| | ||||| |||| || ||||||||| || |||||||| Sbjct 59889 TGCCGCCAGGTGAACGTTGAGACTCTGACTCTGGCAGATAAAGGCACCGCGGTCAGCAGC 59830 Query 293151 GAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGA---C 293207 |||||| | || ||||| ||||||||||| |||||||| | ||||||| Sbjct 59829 GAGGTCCAGGACCTTCTTCTGGGAGATCTCCCAGACAGTCTTGTAAATGGCCTTGATGTT 59770 Query 293208 ATCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTG---GCAATAATCTGGTT 293264 ||||| | || ||| ||||| | || ||||||| ||||||||| ||| Sbjct 59769 GTCAGGGATATTGGGAAT---GTTCTGAACGGA---TCCGTTGTGAGCAATAATCATGTT 59716 Query 293265 CTTCATTGTCTCGGACC-AAGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGA 293323 |||||| | || || |||||| | || | | || || || | | | | | | Sbjct 59715 CTTCATGTTATCATCCCAAAGTCCGA-GATCGACAAGATCACGAAGTAACCACGGGCAAA 59657 Query 293324 CAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTT 293366 |||| |||| ||||||||||| || || |||| ||||| Sbjct 59656 CAACCTGGAATTCACCAGCGAGGACACGGCGAGTGTAGATGTT 59614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027803126460437