Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2123 212 1e-49 seq2416 159 7e-34 >seq2123 Length=425399 Score = 212 bits (234), Expect = 1e-49 Identities = 398/575 (69%), Gaps = 19/575 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| | ||| |||||||||||| ||||| || ||| Sbjct 272202 ATCTGGCAAATGTACAAGAAGGCCGAAGCCTCATTCTGGACCGCCGAAGAGATGGATCTG 272143 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA-----GTT-TTTCCTC 42413 | |||||| | || |||| | || | ||| ||||||| || |||| || Sbjct 272142 TCGAAGGACTTGCACGACTGGAACA-ACCGCATGA--ACGAAAACGAGCGTCATTTCATC 272086 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 | || | || || ||||||||||| ||||| || || ||||| ||||| || | | Sbjct 272085 TCACACGTCCTCGCATTCTTCGCCGCTTCTGATGGGATTGTCAACGAGAATCTCGTCGAG 272026 Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533 | ||| || || |||||| ||| ||||| ||||||||||| ||||| || Sbjct 272025 CGTTTCTCTAATGAAGTGCAGGCTGCTGAAGCGCGGTGCTTCTACGGGTTCCAAATCATG 271966 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGAT 42590 || |||||| | |||||||| ||| | ||| |||| |||| ||||| ||| Sbjct 271965 ATGGAGAACATTCACTCTGAAACATACTC---ACTCCTCATCGACACCTACATTAAAGAT 271909 Query 42591 CC-CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAA 42649 | || | | | ||| || ||| | ||| | || || || |||||| ||||| || Sbjct 271908 GCTCGCCAACGGGAACAC-CTCTTCGATGCCGTTGAAACCATCCCCTGCGTCAAGCGCAA 271850 Query 42650 GGCGGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGCAACGTTCGGCGAGAGGCTGG 42708 ||| |||||||| || |||||| || | || | | | || || ||| | |||| Sbjct 271849 GGCCGACTGGGCTCTTCGATGGATCTCCGATACACG-CTCGATCTTTGGTGAGCGTCTGG 271791 Query 42709 TAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGC 42768 | ||||| | ||||||||||| |||||||||||||| | ||||| | || |||||| Sbjct 271790 TTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCTCGGGGTCGTTCGCTGCTATTTTCTGGA 271731 Query 42769 TCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 | ||| || | | |||||||||| | || ||||| || |||||||| ||| | |||| Sbjct 271730 TGAAGAAGCGTGGTTTGATGCCCGGATTGACGTTCTCCAATGAACTCATTAGCCGTGACG 271671 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 |||| |||| | || ||||| ||||| || ||| Sbjct 271670 AGGGCATGCACACCGATTTTGCTTGCCTTCTCTTC 271636 Score = 109 bits (120), Expect = 1e-18 Identities = 130/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 42970 TGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCC 43029 || |||| |||||| | | || ||||| |||||||| ||| |||||||||| || | Sbjct 271480 TGATCGGGATGAACGCCAAACTTATGTGTCAGTACATCGAGTTTGTCGCCGACCGCCTGC 271421 Query 43030 T-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAG 43088 | || || ||||| | | ||||||||| || |||||||||||| ||||| Sbjct 271420 TTGTTGCAT-TGGGTAACGACAAGGTCTACAACAGCACGAACCCCTTCGACTTCATGGAT 271362 Query 43089 AACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 | |||||| || |||||||||||||||| || |||||||| ||| | |||||| Sbjct 271361 ATGATCTCGCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGTGTCTCGGACTAC 271308 >seq2416 Length=74831 Score = 159 bits (176), Expect = 7e-34 Identities = 362/532 (68%), Gaps = 13/532 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || ||||||||||| || |||||||| || || || ||||| | | ||| Sbjct 66821 CTCGCTTTCTTCGCCGCTTCAGACGGCATTGTTAACGAAAACCTCGTGGAACGTTTCTCA 66880 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || || ||| | || ||||| || |||||||| |||||||| || || || Sbjct 66881 AATGAAGTTCAGGCCGCCGAAGCGCGTTGTTTCTACGGTTTCCAGATCATGATGGAAAAT 66940 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC-CGTCGA-GC 42600 | || || ||| ||| || || || |||| |||||| || || || | | || Sbjct 66941 ATTCATTCCGAGACATACTCCCTCCTCATCGACACCTACATCAAAGACCCTCGACAACGC 67000 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | ||| || ||| | || | || || || || || ||||| ||||| ||||||| Sbjct 67001 G-AACAC-CTCTTCGATGCTGTTGAAACCATTCCTTGTGTCAAGCGTAAGGCTGACTGGG 67058 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 | ||| |||||| | | | | || |||| ||||| || | || || || ||| | Sbjct 67059 CTCTCCGATGGATCTCG-GACAAG-CGTTCAACATTCGGTGAACGCCTTGTCGCGTTTGC 67116 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 || || || ||||| |||||||| || | |||||| ||||||||||| | ||| || Sbjct 67117 AGCGGTAGAAGGCATTTTCTTCTCCGGTTCATTCGCCGCCATCTTCTGGATGAAGAAGCG 67176 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 | | |||||| || | |||||||| || || ||||||||| | |||||||| |||| Sbjct 67177 AGGGCTGATGCCTGGCTTGACCTTCTCCAATGAGCTCATCAGCCGTGACGAGGGCATGCA 67236 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGC 42897 | |||||||||||||| | ||| |||||||| | || |||||| || Sbjct 67237 CACCGACTTTGCCTGCCTTC---TCTTTAGCCACCTGAAGC-GTCGCCCTCATCCCGACA 67292 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||| | || ||||| || || || |||| ||| ||||||||||||| Sbjct 67293 CTGTCAAGCGGATTATCACCGAAGCAGTCAAGATTGAGCAGGAGTTCCTCAC 67344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944309016558320