Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2206 131 4e-25 seq1986 114 3e-20 seq2372 96.9 8e-15 >seq2206 Length=69542 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| ||||| |||| || |||||||| || || ||||| | Sbjct 41282 CCACCACGGAGACGAAGCACGAGGTGAAGTGTAGACTCTTTTTGAATGTTGTAGTCAGAA 41341 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | ||| || || |||||||||||||| || || | || Sbjct 41342 AGAGTACGACCGTCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGAGGA 41401 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || || || ||||| || || || | ||| || || || Sbjct 41402 ATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCCACC 41461 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||||||||| || || || ||||||||||| |||||||| Sbjct 41462 TCCAAAGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 41508 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||||| || || || || ||||| | || || || ||||| Sbjct 41090 TCCTTCTGAATGTTATAGTCGGAAAGAGTACGCCCATCTTCGAGCTGCTTCCCGGCGAAA 41149 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||||||||| || |||||||| || ||||| || || || |||||||| Sbjct 41150 ATGAGACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTG 41209 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || || || || |||||||| || || || ||||||||| Sbjct 41210 TCAATGGTGTCGGACGACTCGACCTCCAGGGTAATCGTCTTACCCGTGAGGGTCTTGACG 41269 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 41270 AAGATTTGCAT 41280 >seq1986 Length=559288 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| ||||| |||| ||| || || || ||||| | |||||||| || || Sbjct 253171 TCTTTCTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCGAGCTGTTTTCCAGCAAAA 253230 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || | ||||| ||||| || ||||| || || || || || || Sbjct 253231 ATAAGACGTTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTTACATTG 253290 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || ||||||||||| ||||| || ||||| | |||||| ||| Sbjct 253291 TCGATGGTGTCCGAAGACTCGACTTCGAGCGTTATCGTTTTTCCGGTTAAAGTCTTCACG 253350 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 253351 AAGATTTGCAT 253361 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || || |||| ||| ||| || || || || ||||| | Sbjct 253638 CCGCCACGGAGACGGAGGACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAT 253697 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || ||||| || || |||| || ||||| ||| Sbjct 253698 AGGGTACGACCATCCTCAAGCTGCTTTCCAGCAAAAATCAATCGTTGTTGGTCGGGCGGG 253757 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | || ||| || || Sbjct 253758 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATGGTGTCAGGCGACTCGACC 253817 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||||||||| || ||||| Sbjct 253818 TCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 253864 >seq2372 Length=127870 Score = 96.9 bits (106), Expect = 8e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 72407 TCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGAC 72466 |||| | | |||||| || | || ||| | || ||||| || || | ||||||||| Sbjct 113816 TCGATTCTACCAAGCTTCGACTTCTGAGCTCTACGGAAAGGTCGTTGAGACTCCTCAGAC 113757 Query 72467 GGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTG 72526 ||| || || || || || || || || || ||||| |||||||||||||| | ||| Sbjct 113756 GGAGAAAACGCCATTCTACCCGCGTAGTCCATACGGCTGCGCAAAGTTGTACGCGTTTTG 113697 Query 72527 GATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAA 72586 |||| | || |||||||| | ||| |||||||| || ||| || ||||| Sbjct 113696 GATCACTGTCAACTACCGTGAAGCATATGGCATGTATGCGTGTAACGGTATCCTCTTCAA 113637 Query 72587 TCACGAGAGTCCCAACAGAGG-CCATCAGTTCGTGACTCGTAAAATC 72632 ||||| |||||| ||||| | || |||||||| | |||||| Sbjct 113636 CCACGAAAGTCCCCGGAGAGGAAGAACA-TTCGTGACGAGGAAAATC 113591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179615752678646