Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2416 109 1e-18 seq2123 104 5e-17 seq2372 96.9 8e-15 >seq2416 Length=74831 Score = 109 bits (120), Expect = 1e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || || || |||||| || | |||||| | ||||||||||| || || ||||||||| | Sbjct 67419 CTCATCGGAATGAACGCTAAGCTCATGTGTCAGTACATCGAGTTTGTTGCCGACCGCCTG 67478 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | || | ||| | || || | |||||| || |||||||| | ||| ||||| Sbjct 67479 CTCGTTGCTTTGGGTAACGACAAGATCTACAACAGCACCAACCCCTTCGACTTCATGGAC 67538 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 | |||||| | ||||| || || ||||||||||| ||||| || |||||| Sbjct 67539 ATGATTTCGTTGCAAGGAAAGACAAACTTCTTCGAGAAGCGAGTATCTGATTA 67591 >seq2123 Length=425399 Score = 104 bits (114), Expect = 5e-17 Identities = 124/167 (74%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 243561 GCTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619 |||| || || |||||| | |||| ||| | ||||||||||| || || ||||||||| Sbjct 271483 GCTTGATCGGGATGAACGCCAAACTTATGTGTCAGTACATCGAGTTTGTCGCCGACCGCC 271424 Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 | | | || | ||| | || || || |||||| || ||||||||| | ||| |||| Sbjct 271423 TGCTTGTTGCATTGGGTAACGACAAGGTCTACAACAGCACGAACCCCTTCGACTTCATGG 271364 Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTC 243726 | | || ||||| || || || || |||||||| || ||||||||| Sbjct 271363 ATATGATCTCGCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGTGTC 271317 >seq2372 Length=127870 Score = 96.9 bits (106), Expect = 8e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 68396 TCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGAC 68455 |||| | | |||||| || | || ||| | || ||||| || || | ||||||||| Sbjct 113816 TCGATTCTACCAAGCTTCGACTTCTGAGCTCTACGGAAAGGTCGTTGAGACTCCTCAGAC 113757 Query 68456 GGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTG 68515 ||| || || || || || || || || || ||||| |||||||||||||| | ||| Sbjct 113756 GGAGAAAACGCCATTCTACCCGCGTAGTCCATACGGCTGCGCAAAGTTGTACGCGTTTTG 113697 Query 68516 GATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAA 68575 |||| | || |||||||| | ||| |||||||| || ||| || ||||| Sbjct 113696 GATCACTGTCAACTACCGTGAAGCATATGGCATGTATGCGTGTAACGGTATCCTCTTCAA 113637 Query 68576 TCACGAGAGTCCCAACAGAGG-CCATCAGTTCGTGACTCGTAAAATC 68621 ||||| |||||| ||||| | || |||||||| | |||||| Sbjct 113636 CCACGAAAGTCCCCGGAGAGGAAGAACA-TTCGTGACGAGGAAAATC 113591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102843867927950