Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2416 107 2e-18 seq1986 105 6e-18 seq2123 100 3e-16 seq2206 95.1 1e-14 seq2370 91.5 1e-13 >seq2416 Length=74831 Score = 107 bits (118), Expect = 2e-18 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 47385 GCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATC 47444 || || ||||| |||| || | | ||||||||||| || | ||| | |||||||| Sbjct 67398 GCAGATGCTCTCCCCGTCTCACTCATCGGAATGAACGCTAAGCTCATGTGTCAGTACATC 67457 Query 47445 GAATTTGTCGCCGACCGCCTGCTCGTTCAGC-TAAAGTATC-CCAAGATTTACCACACCG 47502 || ||||| |||||||||||||||||| || | ||| | |||||| ||| ||| | Sbjct 67458 GAGTTTGTTGCCGACCGCCTGCTCGTT--GCTTTGGGTAACGACAAGATCTACAACAGCA 67515 Query 47503 AGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGA 47562 || || ||||| || ||| ||| |||||| | | || ||||| ||||| ||||||| Sbjct 67516 CCAACCCCTTCGACTTCATGGACATGATTTCGTTGCAAGGAAAGACAAACTTCTTCGAGA 67575 Query 47563 AGCGCGT 47569 |||| || Sbjct 67576 AGCGAGT 67582 >seq1986 Length=559288 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || || |||||| | || || ||| || |||||||||||| Sbjct 253165 GTCGACTCTTTCTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCGAGCTGTTTTCCA 253224 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | || ||||| || || || ||||| ||||||||| || || ||| Sbjct 253225 GCAAAAATAAGACGTTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTT 253284 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| | ||||||||||| || | |||||| ||||| | ||| Sbjct 253285 ACATTGTCGATGGTGTCCGAAGACTCGACTTCGAGCGTTATCGTTTTTCCGGTTAAAGTC 253344 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || || || || |||||| || Sbjct 253345 TTCACGAAGATTTGCATGCCT 253365 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | || ||| ||| || ||||| |||||| Sbjct 253440 GTTGACTCCTTCTGGATGTTGTAATCGGAGAGGGTACGACCATCTTCGAGCTGCTTTCCA 253499 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | || ||||| || || || || |||||||||||| ||| || ||| Sbjct 253500 GCGAAAATAAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTT 253559 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| || |||| |||||| || | || | || || ||||||| ||| Sbjct 253560 ACGTTG-TCGATAGTATCCGACGACTCGACCTCAAGTGTAATGGTCTTTCCGGTCAAAGT 253618 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 253619 CTTCACAAAGATCTGCAT 253636 >seq2123 Length=425399 Score = 100 bits (110), Expect = 3e-16 Identities = 121/161 (75%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||||| | | ||| | |||||||||| |||||||||||||||||||| ||| Sbjct 271475 GGGATGAACGCCAAACTTATGTGTCAGTACATCGAGTTTGTCGCCGACCGCCTGCTTGTT 271416 Query 47472 CAGC-TAAAGTATCC-CAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 || | ||| | |||| | ||| ||| | ||| || ||||| || ||| | | | Sbjct 271415 --GCATTGGGTAACGACAAGGTCTACAACAGCACGAACCCCTTCGACTTCATGGATATGA 271358 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 | ||||| |||||||||||||||| || |||||||| ||| Sbjct 271357 TCTCGCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGTGTC 271317 >seq2206 Length=69542 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||||||||| ||||| || | || ||| || || || || || ||| Sbjct 41312 GTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGTACGACCGTCCTCGAGTTGCTTGCCA 41371 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| || ||||| || ||||| ||||| ||||||||| || || ||| Sbjct 41372 GCGAAGATCAGACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTC 41431 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | | ||| || || | || | ||| || || || || || Sbjct 41432 ACATTGTCGATGGTGTCGGAAGACTCCACCTCCAAAGTGATCGTCTTACCCGTGAGGGTC 41491 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 41492 TTGACGAAGATCTGCAT 41508 >seq2370 Length=49093 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | ||||||||||| || | |||||||| || ||||| ||||| || Sbjct 22840 GCGCCACCGCGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCA 22899 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | ||||| ||| || |||||||||||||| |||||| |||||||| || || Sbjct 22900 CTGAGAGTGCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGG 22959 Query 127004 GGTAT 127008 || || Sbjct 22960 GGAAT 22964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485601805680