Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1986 111 1e-19 seq2206 89.7 3e-13 >seq1986 Length=559288 Score = 111 bits (122), Expect = 1e-19 Identities = 144/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||| || || ||| | || |||| || ||||||||||| ||||| Sbjct 253171 TCTTTCTGGATGTTATAATCGGAGAGGGTACGGCCATCTTCGAGCTGTTTTCCAGCAAAA 253230 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | || |||||||| |||||| || || || Sbjct 253231 ATAAGACGTTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTTAC--AT 253288 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || |||| ||||| |||||||| || | |||||| Sbjct 253289 --TGTCGATGGTGTCCGAAGACTCGACTTCGAGCGTTATCGTTTTTCCGGTTAAAGTCTT 253346 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||| ||||| Sbjct 253347 CACGAAGATTTGCAT 253361 Score = 107 bits (118), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| ||||||||||| |||||||| ||| | || |||| || ||||| Sbjct 253661 GTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGATAGGGTACGACCATCCTCAAGCTG 253720 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||||| ||||| || | |||||| ||||| |||| | || |||||||| ||||| Sbjct 253721 CTTTCCAGCAAAAATCAATCGTTGTTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTT 253780 Query 34898 CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 ||||| | ||||||| ||| | ||| || |||| || ||||| || | Sbjct 253781 GGCCTTGAC----GTTATCGATGGTGTCAGGCGACTCGACCTCGAGAGTGATGGTCTTGC 253836 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| ||||| || || || ||||| Sbjct 253837 CAGTGAGGGTCTTGACGAAAATTTGCAT 253864 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || || ||| | || |||| || ||||| ||||| || || Sbjct 253446 TCCTTCTGGATGTTGTAATCGGAGAGGGTACGACCATCTTCGAGCTGCTTTCCAGCGAAA 253505 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | ||||||||||| ||||| || || Sbjct 253506 ATAAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTTAC---- 253561 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | | ||||| | ||| | ||| || || | || ||||| ||||| || | |||||| Sbjct 253562 GTTGTCGATAGTATCCGACGACTCGACCTCAAGTGTAATGGTCTTTCCGGTCAAAGTCTT 253621 Query 34967 CACAAAGATCTGCATA 34982 |||||||||||||||| Sbjct 253622 CACAAAGATCTGCATA 253637 >seq2206 Length=69542 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| ||||| | || |||| || ||||| || ||||| || Sbjct 41090 TCCTTCTGAATGTTATAGTCGGAAAGAGTACGCCCATCTTCGAGCTGCTTCCCGGCGAAA 41149 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | || |||||||| |||||| || ||| Sbjct 41150 ATGAGACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTG 41209 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| || || || |||||||| ||||| || Sbjct 41210 TCAATGGTGTCGGACGACTCGACCTCCAGGGTAATCGTCTTACCCGTGAGGGTCTTGACG 41269 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 41270 AAGATTTGCATA 41281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324623483301096