Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2416 132 5e-26 seq2123 118 1e-21 seq1573 91.5 2e-13 >seq2416 Length=74831 Score = 132 bits (146), Expect = 5e-26 Identities = 356/539 (66%), Gaps = 9/539 (2%) Strand=Plus/Minus Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 |||||||| | || || | ||||| || || || || ||||||||||| |||| || Sbjct 67230 CCCTCGTCACGGCTGATGAGCTCATTGGAGAAGGTCAAGCCAGGCATCAGCCCTCGCTTC 67171 Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101 || | |||||| || | || ||||| || || ||||| || |||||||| |||||||| Sbjct 67170 TTCATCCAGAAGATGGCGGCGAATGAACCGGAGAAGAAAATGCCTTCTACCGCTGCAAAC 67111 Query 19102 GCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCA 19161 || || || | ||| || | | | | || | |||||| || ||||| ||| Sbjct 67110 GCGACAAGGCGTTCACCGAATGTTGAACGCTTGTCCGAGATCCATCGGAGAGCCCAGTCA 67051 Query 19162 GCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGC-TCATC 19220 ||||| || ||||| || || || || | || || || || | | ||| | || Sbjct 67050 GCCTTACGCTTGACACAAGGAATGGTTTCAACAGCATCGAAGAGGT--GTTCGCGTTGTC 66993 Query 19221 -TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTA 19279 | ||||| | || | || || | | ||| | || |||||||||||||| | Sbjct 66992 GAGGGTCTTTGATGTAGGTGTCGATGAGGAGGGAGTATGTCTCGGAATGAATATTTTCCA 66933 Query 19280 TAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATC 19339 | ||||| || ||||| ||||| | ||||| | ||| |||||| | | || | Sbjct 66932 TCATGATCTGGAAACCGTAGAAACAACGCGCTTCGGCGGCCTGAACTTCATTTGAGAAAC 66873 Query 19340 TTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTT 19399 ||| || | ||||| ||||| || || || ||| || || || || | ||||| Sbjct 66872 GTTCCACGAGGTTTTCGTTAACAATGCCGTCTGAAGCGGCGAAGAAAGCGAGGACATGAG 66813 Query 19400 TAATAAAATGTTTTTCATCTGAGGTTAATG----TATTCCAATCATTAATATCTTTAGAT 19455 || || || || | || || ||| | ||||| || | | ||||| ||| Sbjct 66812 AGATGAAGTGACGCTCGT-TGTCATTCATGCGGTTGTTCCAGTCGTGCAAGTCTTTGGAT 66754 Query 19456 AAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 | ||| | |||||| | ||||| || || || ||||||||||| ||||| | ||| || Sbjct 66753 AGATCCATTTCTTCCGCAGTCCAGAATGATGCTTCTGCTTTTTTGTACATTTGCCAGAT 66695 >seq2123 Length=425399 Score = 118 bits (130), Expect = 1e-21 Identities = 361/555 (65%), Gaps = 5/555 (1%) Strand=Plus/Minus Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 ||||| || ||||| || ||||| | ||| |||||||| || ||| | || | || Sbjct 273857 GCAAACTCTGTATGTAACCCTTCGTCACGACTGATCAATTCGTTGGAATAGGTCAGTCCT 273798 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083 ||||| || |||| || |||| ||| ||||| |||||||| || || || || || || Sbjct 273797 GGCATAAGACCTCGCTTCTTTATCCAAAATATGGAAGCAAAGGAGCCGGAGAAAAAGATT 273738 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 || || || || || ||||| || | | ||| || || | | |||| ||| Sbjct 273737 CCCTCCACCGCAGCGAAAGCCACCAAACGTTCAGCAAAAGATGTTTGTTTATCCGATATC 273678 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || | |||||| ||||||||| | | || || || || ||||| | | ||| Sbjct 273677 CAGCGGATTGCCCAGTCAGCCTTCCGTCGGATGCAAGGAATGGTTTCTATCGCGTCAAAC 273618 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 ||||| || || || ||||| | || | ||||| | | | ||| || Sbjct 273617 AGATATTGCCGTTCGGTTGGGTCTTTGATGTAGGTGTCTATGAGAAGAGAGTATGCCTCG 273558 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || || ||||| || || || || || |||||||||| ||||||| | || Sbjct 273557 GAGTGGATGTTTTCCATCATAATTTGGAAACCATAAAAACATCGCGCTTCTGCCACTTGC 273498 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 || || | |||| | ||| || | || || || ||||||||||| || || || Sbjct 273497 ACCTCGTTTGAAAACCGTTCTACTAGGTTCTCGTTCACTATTCCATCTGACGCAGCGAAG 273438 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT--AATG--TATTCCAATC 19439 || || | || | | |||| | |||| ||| ||| || | ||||| || Sbjct 273437 AAAGCAAGAACCCGGGATACGAAATATCGTTCA-CTGTCGTTTAAACGGTGGTTCCAGTC 273379 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 | | || |||||||| |||| |||||| | ||||| || || || |||||| ||| Sbjct 273378 CATCAAGTCGTTAGATAAGTCTATTTCTTCGGCAGTCCAGAATGACGCTTCTGCTCGTTT 273319 Query 19500 ATACATGTTCCATAT 19514 ||||| |||||| Sbjct 273318 GTACATTCGCCATAT 273304 >seq1573 Length=133326 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48221 ATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATT 48280 ||| || ||||||||||| ||||| || | | | | ||| || |||||| || Sbjct 58601 ATCAGGGATCCAAAGAGCGTAGAATAAGTCACGGGCACGGACTTCCTCCTTGCCATGGTT 58542 Query 48281 CCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCAT 48340 | | |||| |||| ||| | | || || || ||||| || || | ||| || || | Sbjct 58541 CTTCCTAAGGTCAATGAAGGCGAAGATGTCGGCGTGCCACGGCTCAATATACATGGCAAA 58482 Query 48341 TACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCT 48400 | ||||||| || || || |||||||| || | || | ||| ||| | |||| ||| Sbjct 58481 TGCACCTGGACGCTTGTTGCCTCCTTGGTCGACGTAACGGGCGGTAGCATCATAAGCTCG 58422 Query 48401 TAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 | ||| || || ||||||||||| ||||||||||| | ||| || Sbjct 58421 AAGCATGGGCACTATACCATTTGAGTAGCCATTGGTTCCAGCAATGTA 58374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562090833597480