Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1986 102 7e-16 seq1627 95.1 1e-13 seq1982 86.0 5e-11 >seq1986 Length=559288 Score = 102 bits (112), Expect = 7e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| ||||| |||||||| ||| | | ||| || || ||||| | || || | Sbjct 253144 AGACGGAGGACAAGGTGAAGGGTCGACTCTTTCTGG--ATGTTATAATCGGAGAGGGTAC 253201 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| || |||||||| ||||||||||| | |||||| ||||| || || |||| Sbjct 253202 GGCCATCTTCGAGCTGTTTTCCAGCAAAAATAAGACGTTGCTGGTCAGGGGGGATGCCTT 253261 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || || ||||| || ||||| || || || || | || | | |||||| Sbjct 253262 CCTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCG-AAGACTCGACTTCGAGC 253320 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||||| || || | ||| || ||||| |||||||| Sbjct 253321 GTTATCGTTTTTCCGGTTAAAGTCTTCACGAAGATTTGCAT 253361 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| ||||| ||||| || ||| || ||| ||||| || | ||| || | Sbjct 253646 GAGACGGAGGACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGATAGGGTACG 253705 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| || ||||| |||||||| | || ||| || || || || || ||||| Sbjct 253706 ACCATCCTCAAGCTGCTTTCCAGCAAAAATCAATCGTTGTTGGTCGGGCGGGATGCCTTC 253765 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAG 563434 || || || || || || || || || || |||| | || | | ||||||| Sbjct 253766 CTTGTCCTGGATCTTGGCCTTGACGTTATCGATGGTGTCAG-GCGACTCGACCTCGAGAG 253824 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || ||||| || || || |||||||||||||| Sbjct 253825 TGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 253864 >seq1627 Length=307702 Score = 95.1 bits (104), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || || || || || || ||||| ||||||| || || ||||||||||| ||| ||| Sbjct 112404 GTTCCTGCCTACTTCAACGACTCCCAACGTCTTGCAACCAAAGATGCTGGTGCTATCGCT 112345 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 || || ||||||||||||| ||||| || || |||||||| || |||| || || ||| Sbjct 112344 GGTCTCGATGTTCTTCGTATCATCAACGAGCCCACTGCTGCCGCTATTGCCTACGGTCTT 112285 Query 550532 GA 550533 || Sbjct 112284 GA 112283 >seq1982 Length=80753 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||||||||| || || |||||||| ||||| || || || |||||| Sbjct 44850 GGTATTCCCCCTGCTCCTCGTGGTGTTCCTCAAATTGAGGTTACCTTTGAGATTGATGCC 44791 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||| || |||| |||||| Sbjct 44790 AATGGTATCATGAAGGTCGCTGCCGCTGATAA 44759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029160774307930