Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2206 98.7 8e-16 seq1986 95.1 9e-15 >seq2206 Length=69542 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||||||||| ||||| ||||| ||| | ||| |||| || | ||||| || || || Sbjct 41317 CTCTTTTTGAATGTTGTAGTCAGAAAGAGTACGACCGTCCTCGAGTTGCTTGCCAGCGAA 41376 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| || || || || | |||| ||| |||||||| |||||| || ||| Sbjct 41377 GATCAGACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATT 41436 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||||||||||| || ||||| || ||||| | || || || Sbjct 41437 GTCGATGGTGTCGGAAGACTCCACCTCCAAAGTGATCGTCTTACCCGTGAGGGTCTTGAC 41496 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 41497 GAAGATCTGCAT 41508 >seq1986 Length=559288 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||| || ||| | ||| | || ||||||||||| || ||||| Sbjct 252942 CTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCATCCTCCAACTGCTTTCCAGCAAA 253001 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||||||||| | ||| | ||| |||||||| ||||| || || Sbjct 253002 GATCAAACGCTGTTGATCAGGGGGTATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 253061 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | ||||| || ||||| || | || || || Sbjct 253062 GTCAATGGTGTCCGAAGACTCAACCTCAAGAGTAATGGTCTTTCCGGTGAGCGTCTTGAC 253121 Query 48755 AAAAATCTGCAT 48766 |||||| ||||| Sbjct 253122 AAAAATTTGCAT 253133 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||| || || | ||| | || || | |||||| || || || Sbjct 253445 CTCCTTCTGGATGTTGTAATCGGAGAGGGTACGACCATCTTCGAGCTGCTTTCCAGCGAA 253504 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || || || || || | || | ||||||||||| ||||| ||||| Sbjct 253505 AATAAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTTACGTT 253564 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || |||| ||| ||||| | ||||| || ||||| |||||||| || || Sbjct 253565 GTCGATAGTATCCGACGACTCGACCTCAAGTGTAATGGTCTTTCCGGTCAAAGTCTTCAC 253624 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 253625 AAAGATCTGCAT 253636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380925728674911