Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1986 123 2e-22 seq2206 105 4e-17 seq1982 95.1 8e-14 >seq1986 Length=559288 Score = 123 bits (136), Expect = 2e-22 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||| ||||| || ||||| | |||||||| | || || Sbjct 253140 ACGAAGACGGAGGACAAGGTGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAGAGGGT 253199 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || || ||||||||||||||||||||||| || ||||| || || || Sbjct 253200 ACGGCCATCTTCGAGCTGTTTTCCAGCAAAAATAAGACGTTGCTGGTCAGGGGGGATGCC 253259 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| || ||| || || || || | | | | ||| | Sbjct 253260 TTCCTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCGA-CTTCGA 253318 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| ||||| | |||||| ||||| ||||| Sbjct 253319 GCGTTATCGTTTTTCCGGTTAAAGTCTTCACGAAGATTTG 253358 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| || ||| || || || || || | ||| || Sbjct 253643 ACGGAGACGGAGGACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGATAGGGT 253702 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||| ||||||||||||||||| | |||||||| || || || || || Sbjct 253703 ACGACCATCCTCAAGCTGCTTTCCAGCAAAAATCAATCGTTGTTGGTCGGGCGGGATGCC 253762 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA-GTGTGTGAAGTTTCAA 480729 ||||||||| || ||||| ||||| || || || ||| | | | | || | Sbjct 253763 TTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATGGTGTCAGGCGACTCGA-CCTCGA 253821 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| ||||| ||||||||||| Sbjct 253822 GAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTG 253861 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | ||||| | ||| || | |||||||||||||| || | ||| ||| Sbjct 252955 TTGTAATCCGAGAGAGTGCGACCATCCTCCAACTGCTTTCCAGCAAAGATCAAACGCTGT 253014 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| || || ||||||||||| || ||||| ||||| ||||| || || Sbjct 253015 TGATCAGGGGGTATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCC 253074 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || ||||| ||||| || || |||||||| ||||| || |||||||| Sbjct 253075 GAAGACTCAA-CCTCAAGAGTAATGGTCTTTCCGGTGAGCGTCTTGACAAAAATTTG 253130 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||||||||| |||||||||||||| || ||||| || || || ||||| Sbjct 253481 ATCTTCGAGCTGCTTTCCAGCGAAAATAAGACGTTGCTGGTCAGGTGGGATACCCTCCTT 253540 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| || || || |||||||| | | | | ||||| |||| Sbjct 253541 GTCCTGGATCTTGGCCTTTACGTTGTCGATAGTATCCGACGACTCGA-CCTCAAGTGTAA 253599 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || ||||| | |||||| || || || || Sbjct 253600 TGGTCTTTCCGGTCAAAGTCTTCACAAAGATCTG 253633 >seq2206 Length=69542 Score = 105 bits (116), Expect = 4e-17 Identities = 131/177 (74%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| || | ||||| | |||||| || ||||| || || ||||| ||||| ||| Sbjct 41102 TTATAGTCGGAAAGAGTACGCCCATCTTCGAGCTGCTTCCCGGCGAAAATGAGACGCTGT 41161 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || |||||||||||||||||||| ||||||||| || || ||||| || || Sbjct 41162 TGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTTTGCCTTCACGTTGTCAATGGTGTCG 41221 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || |||||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 41222 GACGACTCGA-CCTCCAGGGTAATCGTCTTACCCGTGAGGGTCTTGACGAAGATTTG 41277 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || || ||||||||| ||||| || || || |||| ||||| Sbjct 41287 ACGGAGACGAAGCACGAGGTGAAGTGTAGACTCTTTTTGAATGTTGTAGTCAGAAAGAGT 41346 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || |||||||| ||||| || || |||||||| || ||||||||||| || Sbjct 41347 ACGACCGTCCTCGAGTTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGAGGAATGCC 41406 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| || ||| || || || || | | | | | ||| Sbjct 41407 TTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCCACCTCCAA 41466 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||| ||||| || || Sbjct 41467 -AGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTG 41505 >seq1982 Length=80753 Score = 95.1 bits (104), Expect = 8e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 475985 TTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGA 476044 ||||||||| | || || ||| | ||||| ||||| ||| || |||||| | Sbjct 44955 TTTTCCACTGCCGCCGACAACCAACCCACTGTCCTTATCCAGGTCTACGAGGGTGAACGT 44896 Query 476045 AAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCT 476104 | |||| || ||||| ||| || || | || | || |||||||| |||||| Sbjct 44895 ACTCTCACCAAGGATAACAACCTTCTCGGTAAATTCGAGCTGTCCGGTATTCCCCCTGCT 44836 Query 476105 CCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAAT 476164 || | || |||||||||||||| ||||| ||||| |||||||| |||||||| | || Sbjct 44835 CCTCGTGGTGTTCCTCAAATTGAGGTTACCTTTGAGATTGATGCCAATGGTATCATGAAG 44776 Query 476165 GTTACTGCTTGTGATAA 476181 || |||| |||||| Sbjct 44775 GTCGCTGCCGCTGATAA 44759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268069517863436