Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2123 105 8e-18 seq2416 91.5 2e-13 seq1990 84.2 3e-11 >seq2123 Length=425399 Score = 105 bits (116), Expect = 8e-18 Identities = 341/521 (65%), Gaps = 9/521 (2%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTG-ACGACTGGAAGACCC---TGAA 64769 ||||| || ||||| | ||| |||| || || |||| |||||||||| | || |||| Sbjct 272166 TGGACCGCCGAAGAGATGGATCTGTCGAAGGA-CTTGCACGACTGGAACAACCGCATGAA 272108 Query 64770 TGAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAAT 64829 ||||| || | ||||| || |||| |||||||| || | || ||||| || Sbjct 272107 CGAAAACGAGCGTCATTTCATCTCACACGTCCTCGCATTCTTCGCCGCTTCTGATGGGAT 272048 Query 64830 TGTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 ||| |||||| || | ||| | ||||||||||| |||||||| | Sbjct 272047 TGTCAACGAGAATCTCGTCGAGCGTTTCTCTAATGAAGTGCAGGCTGCTGAAGCGCGGTG 271988 Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | ||| | || ||| | | |||| |||||||| ||| | | Sbjct 271987 CTTCTACGGGTTCCAAATC-ATGATGGAGAACATTCACTCTGAAACATACTCACTCCTCA 271929 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTG 65008 | |||| |||||||| |||| || | | || | || || ||| | |||| Sbjct 271928 TCGACACCTACATTAAAGATGCTCGCCAACGGGAACACCTCTTCGATGCCGTTGAAACCA 271869 Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGC 65067 | || || | || ||||| | ||||| | |||| | | | | | |||| Sbjct 271868 TCCCCTGCGTCAAGCGCAAGGCCGACTGGGCTCTTCGATGGATCTCCGATACACGCTCGA 271809 Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || || | ||||| || |||| || || || ||||||||||||||||| ||||| Sbjct 271808 TCTTTGGT-GAGCGTCTGGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCTCGGGGTCG 271750 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||| ||||||| ||| |||||||||| ||| | ||||| || | ||||| ||| Sbjct 271749 TTCGCTGCTATTTTCTGGATGAAGAAGCGTGGTTTGATGCCCGGATTGACGTTCTCCAAT 271690 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||||| ||| ||| || ||||| | ||| || ||||| Sbjct 271689 GAACTCATTAGCCGTGACGAGGGCATGCACACCGATTTTGC 271649 >seq2416 Length=74831 Score = 91.5 bits (100), Expect = 2e-13 Identities = 343/525 (65%), Gaps = 15/525 (3%) Strand=Plus/Plus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTG-ACGACTGGAAGACCC---TGAA 64769 ||||||||||||||| | ||| | |||||||| |||| |||||||||| | || |||| Sbjct 66731 TGGACTGCGGAAGAAATGGATCTATCCAAAGA-CTTGCACGACTGGAACAACCGCATGAA 66789 Query 64770 TGAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAAT 64829 ||| || || | ||||| | |||| || ||||| || | || || || || Sbjct 66790 TGACAACGAGCGTCACTTCATCTCTCATGTCCTCGCTTTCTTCGCCGCTTCAGACGGCAT 66849 Query 64830 TGTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 |||| || || || | ||| | ||||||| ||| ||||||||| | Sbjct 66850 TGTTAACGAAAACCTCGTGGAACGTTTCTCAAATGAAGTTCAGGCCGCCGAAGCGCGTTG 66909 Query 64890 ATTCTACGCATATCAATGCCATAATG-AAATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | || | ||| ||| ||| ||||| ||| ||||| || | | Sbjct 66910 TTTCTACGGTT-TCCAGATCATGATGGAAAATATTCATTCCGAGACATACTCCCTCCTCA 66968 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAA---GAAGCAGTTATTTGAAGCCATCCAAA 65005 | |||| ||||| || || || || || ||| || | || || || | ||| Sbjct 66969 TCGACACCTACATCAAAGACCC-TC-GACAACGCGAA-CACCTCTTCGATGCTGTTGAAA 67025 Query 65006 CTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTT-TGACACAAAGTCT 65064 | | || ||| | || ||||| | ||||| | |||| | | |||| | Sbjct 67026 CCATTCCTTGTGTCAAGCGTAAGGCTGACTGGGCTCTCCGATGGATCTCGGACAAGCGTT 67085 Query 65065 CGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124 | | |||| || |||||| | |||||||| || || || || ||||||||||| Sbjct 67086 CAA-CATTCGGTGAACGCCTTGTCGCGTTTGCAGCGGTAGAAGGCATTTTCTTCTCCGGT 67144 Query 65125 TCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 |||||| ||| || | ||| |||||||||| || || ||||| ||| | |||||| Sbjct 67145 TCATTCGCCGCCATCTTCTGGATGAAGAAGCGAGGGCTGATGCCTGGCTTGACCTTCTCC 67204 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||||| || || ||| || ||||| | ||| || |||||| Sbjct 67205 AATGAGCTCATCAGCCGTGACGAGGGCATGCACACCGACTTTGCC 67249 >seq1990 Length=437866 Score = 84.2 bits (92), Expect = 3e-11 Identities = 215/320 (67%), Gaps = 22/320 (7%) Strand=Plus/Plus Query 13550 ACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAG--- 13606 || ||| | |||||| | |||||| ||||| || || ||| || || |||| Sbjct 6684 ACTGGTCTACCCAAGCTCTCTGACGCCAACAACGCCGGCACGAAGCA---TGCAAAGGAC 6740 Query 13607 TGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCT 13666 || || ||||| | || || || || || ||||| | || || ||||| |||||| | Sbjct 6741 TGCACCCTCATCCTGACTGAAGGAGACTCTGCTAAGTCACTTGCTGTTGCAGGTCTCGCA 6800 Query 13667 GTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAA-TGTAAGAATGTTCG 13725 || || || || ||| ||| ||||| |||||| | || |||||| ||| ||| || || Sbjct 6801 GTTGTAGGCCGGGATAACTTTGGTGTCTTCCCATTGCGGGGTAAACTGTT-GAACGTCCG 6859 Query 13726 GGACGCTTCGGTGGCACAGCTCACATCAAACCAGGAG-TTCAACGATC-TCAAGAAGATC 13783 || || | | | ||| ||| ||| |||| |||| || | ||||||||||| Sbjct 6860 CGAAGCCAAGTTTGACCAGATCATGAAAAATGAGGAAATTCA--GAACATCAAGAAGATC 6917 Query 13784 CTTGGTCTTC-----AACAAGGAAAAGACTACCAAGATGTTTCTGAACTTCGCTATGGTC 13838 | ||||| | |||||||| | |||| || | || ||||| || || | Sbjct 6918 ATGGGTCTCCAGCATAACAAGGATTATACTA-----ATATCTCGAGTCTTCGTTACGGCC 6972 Query 13839 GTCTTATGATTATGACAGAT 13858 |||| ||||| ||||| ||| Sbjct 6973 GTCTCATGATCATGACCGAT 6992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596550532144160