Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2123 95.1 2e-14 >seq2123 Length=425399 Score = 95.1 bits (104), Expect = 2e-14 Identities = 354/549 (64%), Gaps = 9/549 (2%) Strand=Plus/Minus Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 ||||| || || ||||| ||||| || | || |||||||| | | || | || Sbjct 273857 GCAAACTCTGTATGTAACCCTTCGTCACGACTGATCAATTCGTTGGAATAGGTCAGTCCT 273798 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||| | ||||| || |||| ||||||||| || || || | || || || || Sbjct 273797 GGCATAAGACCTCGCTTCTTTATCCAAAATATGGAAGCAAAGGAGCCGGAGAAAAAGATT 273738 Query 18281 CCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG-TA 18338 ||||| || ||| ||||| || | || | |||||||||| | ||| || || | || Sbjct 273737 CCCTCCACCGCA-GCGAAAGCCACCAAACGTTCAGCAAAAGA-TGTTTGTTTATCCGATA 273680 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 |||| |||||| || | | || || || || | ||||| || | || Sbjct 273679 TCCAGCGGATTGCCCAGTCAGCCTTCCGTCGGATGCAAGGAATGGTTTCTATCGCGTCAA 273620 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 ||| || | ||| | | ||||| || || ||||| || | | ||| || | Sbjct 273619 ACAGATATTGCCGTTCGGTTGGGTCTTTGATGTAGGTGTCTATGAGAAGAGAGTATGCCT 273560 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 | || || ||| ||||||| || || |||| |||||| ||| || || | || Sbjct 273559 CGGAGTGGATGTTTTCCATCATAATTTGGAAACCATAAAAACATCGCGCTTCTGCCACTT 273500 Query 18519 GAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 | | |||| | |||| | |||||| | ||||| || ||||| || || | | |||| Sbjct 273499 GCACCTCGTTTGAAAACCGTTCTACTAGGTTCTCGTTCACTATTCCATCTGACGCAGCGA 273440 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGA---TTGTTCCATT 18635 | || || | ||| | ||||| | |||| | || || | | | |||||| | Sbjct 273439 AGAAAGCAAGAACCCGGGATACGAAATATCGTTCACTGTCGTTTAAACGGTGGTTCCAGT 273380 Query 18636 C-ATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGT 18694 | ||| | || || |||| || | |||||| | ||||| || || | ||| || || Sbjct 273379 CCATCAAG-TCGTTAGATAAGTCTATTTCTTCGGCAGTCCAGAATGACGCTTCTGCTCGT 273321 Query 18695 TTGTACATT 18703 ||||||||| Sbjct 273320 TTGTACATT 273312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731848607541200