Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2123 116 5e-20 seq2416 113 6e-19 >seq2123 Length=425399 Score = 116 bits (128), Expect = 5e-20 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 || |||| ||| || || ||| ||| || |||||||||||||||| ||||||||| Sbjct 271300 GCTTTGGAGTAGTCCGAGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGCGAGATC 271359 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | ||| ||||| | | |||||| ||| ||| || | | | Sbjct 271360 ATATCCATGAAGTCGAAGGGGTTCGTGCTGTTGTAGACCTTGTCGTTACCCAATGCAACA 271419 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 |||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||| Sbjct 271420 AGCAGGCGGTCGGCGACAAACTCGATGTACTGACACATAAGTTTGGCGTTCATCCCGAT 271478 Score = 93.3 bits (102), Expect = 5e-13 Identities = 102/132 (77%), Gaps = 3/132 (2%) Strand=Plus/Minus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 |||| | |||||||| |||||||||| ||||||| | ||| || || ||||| || | Sbjct 273847 TATGTAACCCTTCGTCACGACTGATCAATTCGTTGGAATAGGTCAGTCCTGGCATAAGAC 273788 Query 869232 CGCGCTTCTTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 869290 | |||||||| | |||||| |||| ||| || ||| ||||||||||| ||||| || Sbjct 273787 CTCGCTTCTTTATCCAAAATATGGAAGCA-AAGGAGCCGGAGAAAAAGATTCCCTCCACC 273729 Query 869291 GCGGC-AAAGCC 869301 || || |||||| Sbjct 273728 GCAGCGAAAGCC 273717 >seq2416 Length=74831 Score = 113 bits (124), Expect = 6e-19 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||||| ||| || || ||| |||||| ||||| ||||| || | | ||| ||| Sbjct 67600 GCCTTGGAGTAATCAGATACTCGCTTCTCGAAGAAGTTTGTCTTTCCTTGCAACGAAATC 67541 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | ||| ||||||| | |||||| ||| ||| || | | || Sbjct 67540 ATGTCCATGAAGTCGAAGGGGTTGGTGCTGTTGTAGATCTTGTCGTTACCCAAAGCAACG 67481 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||| Sbjct 67480 AGCAGGCGGTCGGCAACAAACTCGATGTACTGACACATGAGCTTAGCGTTCATTCCGATG 67421 Query 868871 AG 868872 || Sbjct 67420 AG 67419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106929360605569