Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2123 129 9e-24 seq2416 95.1 2e-13 >seq2123 Length=425399 Score = 129 bits (142), Expect = 9e-24 Identities = 230/334 (69%), Gaps = 19/334 (6%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| |||||||||||||||||| | || || || ||||| || || |||||| Sbjct 273839 CCTTCGTCACGACTGATCAATTCGTTGGAATAGGTCAGTCCTGGCATAAGACCTCGCTTC 273780 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 794459 || | |||||| |||| | || ||| ||||||||||| ||||| || || || ||| Sbjct 273779 TTTATCCAAAATATGGAAGCAAAGGAGCCGGAGAAAAAGATTCCCTCCACCGCAGCGAAA 273720 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCC-ACTTC------A 794512 ||| || | || || ||||||| | |||||| |||| | || | Sbjct 273719 GCC-ACCAAACGTTCAGCAAAAG----------ATGTTTGTTTATCCGATATCCAGCGGA 273671 Query 794513 TCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGT 794572 | ||||| || ||||| | | | || | || || || ||| ||| || | | Sbjct 273670 TTGCCCAGTCAGCCTTCCGTCGGATGCAAGGAATGGTTTCTATCGCGTCAAACAGATATT 273611 Query 794573 CCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGA 794632 | ||| ||||| |||| ||||||||| ||||| || ||||| | ||| ||||||| Sbjct 273610 GCCGTTCGGTTGGGTCTTTGATGTAGGTGTCTATGAGAAGAGAGTATGCCTCGGAGTGGA 273551 Query 794633 TGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||||| || || ||||| |||||||| || Sbjct 273550 TGTTTTCCATCATAATTTGGAAACCATAAAAACA 273517 Score = 107 bits (118), Expect = 3e-17 Identities = 201/290 (69%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| | || |||||||| | ||| || || ||| ||| |||||||| ||| Sbjct 271706 CCGGGCATCAAACCACGCTTCTTCATCCAGAAAATAGCAGCGAACGACCCCGAGAAGAAG 271765 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTT- 794498 || ||||||||||| || ||| | || || ||||| |||| | | || | | | | Sbjct 271766 ATACCCTCGACGGCAGCGAAGGCAACCAGACGCTCACCAAAGAT--CGAG--CGTGTATC 271821 Query 794499 GTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 | |||||| | ||||| || ||||| | | || |||| | || || | ||| Sbjct 271822 GGAGATCCATCGAAGAGCCCAGTCGGCCTTGCGCTTGACGCAGGGGATGGTTTCAACGGC 271881 Query 794559 GCGAAAGAGGTGGTCC--TTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 |||||||| ||| || ||| | || || | |||||||||||||||||| ||| Sbjct 271882 ATCGAAGAGGTGTTCCCGTTGGCGAGCA--TCTTTAATGTAGGTGTCGATGAGGAGTGAG 271939 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || || ||||| ||||| || || ||| ||||| || || ||||| Sbjct 271940 TATGTTTCAGAGTGAATGTTCTCCATCATGATTTGGAACCCGTAGAAGCA 271989 Score = 100 bits (110), Expect = 5e-15 Identities = 122/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| ||| || |||||||||||||||| |||||||||| ||||| | ||| Sbjct 271318 ACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATATCCATGAAGTCGAAG 271377 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGC-ACCCGA-GCGACGCAAGCAGGCGGTCGGCGA 794034 ||||| | | |||| ||| ||| |||| | || || ||||||||||||||||| Sbjct 271378 GGGTTCGTGCTGTTGTAGACCTTGTCGTTACCCAATGCAAC--AAGCAGGCGGTCGGCGA 271435 Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGAT 794077 | || || |||||||| ||||| || ||||||||| ||||| Sbjct 271436 CAAACTCGATGTACTGACACATAAGTTTGGCGTTCATCCCGAT 271478 >seq2416 Length=74831 Score = 95.1 bits (104), Expect = 2e-13 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 793895 GCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGA 793954 ||| ||||||| || || || ||| |||||| ||||| ||||| || | | ||| Sbjct 67604 GCCAGCCTTGGAGTAATCAGATACTCGCTTCTCGAAGAAGTTTGTCTTTCCTTGCAACGA 67545 Query 793955 GATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC-ACCCGA-GC 794012 |||| ||||| | ||| ||||||| | |||| ||| ||| |||| | || Sbjct 67544 AATCATGTCCATGAAGTCGAAGGGGTTGGTGCTGTTGTAGATCTTGTCGTTACCCAAAGC 67485 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072 ||| |||||||||||||| || || || |||||||| |||||||| |||||||| Sbjct 67484 AACG--AGCAGGCGGTCGGCAACAAACTCGATGTACTGACACATGAGCTTAGCGTTCATT 67427 Query 794073 CCGATGAGCGCCACGGGCAG 794092 |||||||| | ||||| || Sbjct 67426 CCGATGAGTGAGACGGGGAG 67407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915974400247523