Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1565 109 4e-18 seq1982 89.7 4e-12 >seq1565 Length=138234 Score = 109 bits (120), Expect = 4e-18 Identities = 187/269 (70%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || ||||| || || || || | | || | ||||| || || ||| | ||| Sbjct 69129 CGGTTGTCAAAGTCCTCTCCACCAAGGTGCGTGTCTCCTGCAGTGGCGAGTACCTCGAAT 69188 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||||||| | || | |||| ||| || ||||| || |||| |||| ||| | Sbjct 69189 ACACCATCTTCGACTGAAAGGAGAGAAACGTCGAAAGTTCCTCCGCCCAAATCATAAACA 69248 Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 | || ||| |||| ||| | || | ||||||||||| |||| |||||||| || Sbjct 69249 ATAACCTTCGATTCTG-GTCCT--TTCTGGTCAAGACCATAGGCAAGGGCAGCAGCCGTG 69305 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 ||||| || || | | | ||| || || ||||| || ||||| ||||| || |||||| Sbjct 69306 GGTTCGTTCATCACACGAAGAACGTTGAGTCCAGCGATGCTTCCGGCATCCTTGGTGGCT 69365 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGG 282456 || || || | |||||| |||| || ||| Sbjct 69366 TGCCTCTGCGCATCGTTGAAATCTGAAGG 69394 >seq1982 Length=80753 Score = 89.7 bits (98), Expect = 4e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||||||||||| || || | |||||||||||||| | ||||| || || |||||| Sbjct 44759 TTATCAGCGGCAGCGACCTTCATGATACCATTGGCATCAATCTCAAAGGTAACCTCAATT 44818 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | ||||||| || || || || | ||| | || ||| || Sbjct 44819 TGAGGAACACCACGAGGAGCAGGGGGAATACCGGACAGCTCGAATTTACCGAGAAGGTTG 44878 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATA 281578 ||||| || |||| | |||||||||||| | | |||||| Sbjct 44879 TTATCCTTGGTGAGAGTACGTTCACCCTCGTAGACCTGGATA 44920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740504862105882