Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1986 140 6e-28 seq2206 120 6e-22 >seq1986 Length=559288 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||| || || || |||||||| || |||||||| || Sbjct 253135 CCTCCACGAAGACGGAGGACAAGGTGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAG 253194 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || |||||||||||||| || || | ||| || || || || Sbjct 253195 AGGGTACGGCCATCTTCGAGCTGTTTTCCAGCAAAAATAAGACGTTGCTGGTCAGGGGGG 253254 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || |||||||| || |||||||| || || || || || || ||| Sbjct 253255 ATGCCTTCCTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTCCGAAGACTCGACT 253314 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | |||||||| || || || || ||||| || || || ||||| Sbjct 253315 TCGAGCGTTATCGTTTTTCCGGTTAAAGTCTTCACGAAGATTTGCAT 253361 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| ||||| || || ||||| || || ||||| || ||| | | ||| || || | || Sbjct 252930 GTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCATCCTCCAACTG 252989 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 |||||||||||||| | | |||||||| || ||||| |||||||| || || ||||| Sbjct 252990 CTTTCCAGCAAAGATCAAACGCTGTTGATCAGGGGGTATGCCTTCCTTGTCCTGGATCTT 253049 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || || || ||||| || || || || || || | ||| || ||||| || || Sbjct 253050 GGCCTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCAAGAGTAATGGTCTTTCCGGT 253109 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | |||||| ||||| || ||||| Sbjct 253110 GAGCGTCTTGACAAAAATTTGCAT 253133 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| ||||| ||||| ||||| || || || || | Sbjct 253636 TACCGCCACGGAGACGGAGGACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCG 253695 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | ||| || || || || ||||||||||| || | || |||||| || || | Sbjct 253696 ATAGGGTACGACCATCCTCAAGCTGCTTTCCAGCAAAAATCAATCGTTGTTGGTCGGGCG 253755 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || || || || || || ||| | || | Sbjct 253756 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATGGTGTCAGGCGACTCGA 253815 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || |||||||| || | ||||| || || || ||||| Sbjct 253816 CCTCGAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 253864 >seq2206 Length=69542 Score = 120 bits (132), Expect = 6e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82607 GTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTG 82666 ||| |||||||| || ||||| || ||||| || || ||| | | || ||||| || || Sbjct 41077 GTGGAGAGTAGACTCCTTCTGAATGTTATAGTCGGAAAGAGTACGCCCATCTTCGAGCTG 41136 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || || || || || || | ||||| || ||||| ||||||||||| || |||||||| Sbjct 41137 CTTCCCGGCGAAAATGAGACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTT 41196 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 ||| || || || ||||| || || | || || |||| || |||||||| || || Sbjct 41197 TGCCTTCACGTTGTCAATGGTGTCGGACGACTCGACCTCCAGGGTAATCGTCTTACCCGT 41256 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || || ||||| Sbjct 41257 GAGGGTCTTGACGAAGATTTGCAT 41280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981795033806823