Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1990 91.5 2e-13 seq1573 89.7 6e-13 seq2416 82.4 9e-11 seq2123 82.4 9e-11 >seq1990 Length=437866 Score = 91.5 bits (100), Expect = 2e-13 Identities = 218/317 (69%), Gaps = 16/317 (5%) Strand=Plus/Minus Query 169201 ATCCGTCATGATCATGAGACGACCATACCGAAG-CTCGGAAACATCTTGATAGTCCTTAC 169259 ||| ||||||||||||||||| || || ||||| |||| | | || ||| ||||| Sbjct 6992 ATCGGTCATGATCATGAGACGGCCGTAACGAAGACTCG-AGATATTAGTATAATCCTTGT 6934 Query 169260 CCTGTTGAAGACCCAAGATCTTCTTGA-GATCGTTGAACT-CTTGGTTTGATGTGAGCTG 169317 || || ||||||| ||||||||||| | || |||| | | | ||| ||| ||| Sbjct 6933 TATGCTGGAGACCCATGATCTTCTTGATGTTC--TGAATTTCCTCATTTTTCATGATCTG 6876 Query 169318 TGTGACAGA-GGCATCGCGAACATTCTTACACTTC-CCACGAAGAGGGAAGACACCGTAG 169375 || | | ||| ||||| || ||| ||| || || || | ||||||||||| || Sbjct 6875 -GTCAAACTTGGCTTCGCGGACGTTCA-ACAGTTTACCCCGCAATGGGAAGACACCAAAG 6818 Query 169376 TGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCG 169435 | ||| || || || || | |||||| || || || || | ||| || ||||| || || Sbjct 6817 TTATCCCGGCCTACAACTGCGAGACCTGCAACAGCAAGTGACTTAGCAGAGTCTCCTTCA 6758 Query 169436 GTGACGATGAGCGTACA---TTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCC 169492 || | |||||| || || ||| || || ||| || || ||||| || ||| Sbjct 6757 GTCAGGATGAGGGTGCAGTCCTTTGCA---TGCTTCGTGCCGGCGTTGTTGGCGTCAGAG 6701 Query 169493 AATTTGGGAATACCAGT 169509 | ||||| | |||||| Sbjct 6700 AGCTTGGGTAGACCAGT 6684 >seq1573 Length=133326 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104734 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGG 104793 ||||||| | || || | ||||||| ||||| || || ||||| || | |||||||| Sbjct 58655 CATGAAGCGTGTCGAAGCTGGTGGCAACTGGTCACTGTTCTGTCCTAACGAAGCACCTGG 58714 Query 104794 TCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG 104853 ||| | |||| | |||| ||||| || ||||| ||| || |||||| |||||| Sbjct 58715 TCTTCCTGATGTCTACGGTGCCGAGTTCGAGGCCCTCTACGAGAAATACGAGAGAGAAGG 58774 Query 104854 TCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAAC 104913 ||| || || ||| | || || | | ||| | || |||||| || | || Sbjct 58775 TCGCGCTCGTGAGACTATTCCTGCCCAGAAACTCTGGTATGCCATTCTCGAGGCACAGGT 58834 Query 104914 CGAGACTGGTACACCATACATG 104935 ||||||||||||||| | |||| Sbjct 58835 CGAGACTGGTACACCTTTCATG 58856 >seq2416 Length=74831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 ||| || || |||| ||||| || || || || |||||||| ||||| ||| ||| Sbjct 67096 TGAACGCCTTGTCGCGTTTGCAGCGGTAGAAGGCATTTTCTTCTCCGGTTCATTCGCCGC 67155 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || | ||| | ||||||||||| || ||||| || | ||||||||| ||||| || Sbjct 67156 CATCTTCTGGATGAAGAAGCGAGGGCTGATGCCTGGCTTGACCTTCTCCAATGAGCTCAT 67215 Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 | ||||||||||| | ||| || ||||| Sbjct 67216 CAGCCGTGACGAGGGCATGCACACCGACTTTGC 67248 >seq2123 Length=425399 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/162 (72%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || |||||||| || | | || || || || ||||| ||||| ||||| || ||| Sbjct 273697 TCTTTTGCTGAACGTTTGGTGGCTTTCGCTGCGGTGGAGGGAATCTTTTTCTCCGGCTCC 273756 Query 94855 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 || ||| | || | |||| | |||||||||||||| |||||||| || || ||||| Sbjct 273757 TT-TGCTTCCATATTTTGGATAAAGAAGCGAGGTCTTATGCCAGGACTGACCTATTCCAA 273815 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| | ||| ||||||||| || | || ||||||||| Sbjct 273816 CGAATTGATCAGTCGTGACGAAGGGTTACATACAGAGTTTGC 273857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242157526680