Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2416 140 4e-28 seq2123 131 2e-25 seq1990 116 4e-21 seq1573 100 3e-16 >seq2416 Length=74831 Score = 140 bits (154), Expect = 4e-28 Identities = 351/527 (67%), Gaps = 16/527 (3%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| ||| || || | ||| || | ||||| || || | | ||| Sbjct 67249 GGCAAAGTCGGTGTGCATGCCCTCGTCACGGCTGATGAGCTCATTGGAGAAGGTCAAGCC 67190 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 |||||| || || |||||||||| ||| |||||||| ||| ||||| |||||| || Sbjct 67189 AGGCATCAGCCCTCGCTTCTTCATCCAGAAGATGGCGGCGAATGAACCGGAGAAGAAAAT 67130 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----A 74925 |||||| || ||||| ||||||||||||| |||| | || | || ||| | Sbjct 67129 GCCTTCTACCGCTGCAAACGCGACAAGGCGTTCACCGAATGTTG-AACGCTTGTCCGAGA 67071 Query 74926 TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGA 74985 |||| ||||||| ||||| || || ||||| ||| | || || | || | || Sbjct 67070 TCCATCGGAGAGCCCAGTCAGCCTTACGCTTGACACAAGGAATGGTTTCAACAGCATCGA 67011 Query 74986 AGAG--GCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 |||| | | || || || || || |||| | |||| || | || ||||| || Sbjct 67010 AGAGGTGTTCGCGTTGTC--GAGGGTCTTTGATGTAGGTGTCGATGAGGAGGGAGTATGT 66953 Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 ||| |||||||| || | | |||| | |||||||| | ||||| || || Sbjct 66952 CTCGGAATGAATATTTTCCATCATGATCTGGAAACCGTAGAAACAACGCGCTTCGGCGGC 66893 Query 75104 CTGTACATCCTTTGAAAAA--TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 ||| || || ||||| ||| ||| ||| || || | || |||||||| || ||| Sbjct 66892 CTGAACTTCATTTGAGAAACGTTC--CACGAGGTTTTCGTTAACAATGCCGTCTGAAGCG 66835 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCA---GTGAGTTTGTCC 75218 ||||| ||||| || || ||| ||||| ||||| | |||| || | |||| | Sbjct 66834 GCGAAGAAAGCGAGGACATGAGAGATGAAGTGACGCTCGTTGTCATTCATGCGGTTGTTC 66775 Query 75219 CAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 || || | || ||| | | ||| || || || | |||||||| Sbjct 66774 CAGTCGTGCAAGTCTTTGGATAGATCCATTTCTTCCGCAGTCCAGAA 66728 >seq2123 Length=425399 Score = 131 bits (144), Expect = 2e-25 Identities = 342/513 (67%), Gaps = 24/513 (5%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || | ||| || | |||||| || |||| | || ||||| | |||||||| Sbjct 271666 GCCCTCGTCACGGCTAATGAGTTCATTGGAGAACGTCAATCCGGGCATCAAACCACGCTT 271725 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||||| ||| || || ||| ||| || || ||||||||| || ||||| || || Sbjct 271726 CTTCATCCAGAAAATAGCAGCGAACGACCCCGAGAAGAAGATACCCTCGACGGCAGCGAA 271785 Query 74888 GGCGACAAGGCGTTGCGC---GAACG---GTGCATCGGA-AGTCATCCAAGTCTGAGCCC 74940 ||| || || || | | || || ||| |||||| | |||| || |||||| Sbjct 271786 GGCAACCAGACGCTCACCAAAGATCGAGCGTGTATCGGAGATCCATCGAA----GAGCCC 271841 Query 74941 ATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTC 74999 | || || || || |||| |||| |||| || || | || | ||||||| || ||| Sbjct 271842 AGTCGGCCTTGCGCTTGA-CGCAGGGGATGGTTTCAACGGCATCGAAGAGG--TG--TTC 271896 Query 75000 TCTTCG----GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 | | | | ||| || | | |||| || | |||||||| || || || ||||| Sbjct 271897 CCGTTGGCGAGCATCTTTAATGTAGGTGTCGATGAGGAGTGAGTATGTTTCAGAGTGAAT 271956 Query 75056 CGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT 75115 ||| | | ||| || ||||||| ||||||| || ||| ||| || || || Sbjct 271957 GTTCTCCATCATGATTTGGAACCCGTAGAAGCACCGCGCTTCAGCAGCCTGCACTTCATT 272016 Query 75116 TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAG 75175 || ||| | | ||| |||||| |||| || || || || |||||||| || || || Sbjct 272017 AGAGAAACGCTCGACGAGATTCTCGTTGACAATCCCATCAGAAGCGGCGAAGAATGCGAG 272076 Query 75176 TACCATTTTGATAAAGTGGCGCTC---ATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTC 75232 || | ||| || || ||||| |||| || | |||| ||| || | || ||| Sbjct 272077 GACGTGTGAGATGAAATGACGCTCGTTTTCGTTCATGCGGTTGTTCCAGTCGTGCAAGTC 272136 Query 75233 CCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | || || ||| ||||| ||| | |||||||| Sbjct 272137 CTTCGACAGATCCATCTCTTCGGCGGTCCAGAA 272169 >seq1990 Length=437866 Score = 116 bits (128), Expect = 4e-21 Identities = 182/257 (71%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 118045 ATCGGTCATGATCATCAGGCGGCCGTACCGTAAATCTCTCAGGGAGT--TATAAACCTTA 118102 ||||||||||||||| || |||||||| || | | ||| || | | ||||| |||| Sbjct 6992 ATCGGTCATGATCATGAGACGGCCGTAACGAAGA-CTCG-AGATATTAGTATAATCCTTG 6935 Query 118103 CCATGTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGT 118162 ||| ||||| || | |||||| || | ||| || ||||||||||| | | | ||| Sbjct 6934 TTATGCTGGAGACCCATGATCTTCTTGATGTTCTGAATTTCCTCATTTTTCATGATCTGG 6875 Query 118163 TTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTG 118222 | | |||| || || ||||| | | |||||||||| ||| || || ||||| || Sbjct 6874 TCAAACTTGGCTTCGCGGACGTTCAACAGTTTACCCCGCAATGGGAAGACACCAAAGTTA 6815 Query 118223 TCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTA 118282 || ||||| ||||| | || |||| |||||| | ||| || ||||| || || || Sbjct 6814 TCCCGGCCTACAACTGCGAGACCTGCAACAGCAAGTGACTTAGCAGAGTCTCCTTCAGTC 6755 Query 118283 ATAATAAGAGTGCACTC 118299 | || || ||||| || Sbjct 6754 AGGATGAGGGTGCAGTC 6738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 211/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 152812 TCGGTCATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGACCCGTAGA--CCTTTC 152869 |||||||||||||| ||||| ||||| || || | || || | ||| | |||| Sbjct 6991 TCGGTCATGATCATGAGACGGCCGTAACGAAGA-CTCG-AGATATTAGTATAATCCTTGT 6934 Query 152870 CATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTT 152929 ||| || || || | |||||| |||| ||| || ||||||||| | | | ||| | Sbjct 6933 TATGCTGGAGACCCATGATCTTCTTGATGTTCTGAATTTCCTCATTTTTCATGATCTGGT 6874 Query 152930 TCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGT 152989 | | |||| || || || || | | || ||||| | ||| || || || || | Sbjct 6873 CAAACTTGGCTTCGCGGACGTTCAACAGTTTACCCCGCAATGGGAAGACACCAAAGTTAT 6814 Query 152990 TGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGA 153049 ||||||||||| ||||| |||| |||||| | || || ||||| || || || | Sbjct 6813 CCCGGCCTACAACTGCGAGACCTGCAACAGCAAGTGACTTAGCAGAGTCTCCTTCAGTCA 6754 Query 153050 TAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGG 153109 || || || ||||| | | | | || ||||| ||||||||| ||||||| Sbjct 6753 GGATGAGGGTGCAGTCCTTTGCATGCTTCGTGCCGGCGTTGTTGGCGTCAGAGAGCTTGG 6694 Query 153110 GGATTCCCGTGATCCTG 153126 | | || || | |||| Sbjct 6693 GTAGACCAGTCAACCTG 6677 >seq1573 Length=133326 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||| | || |||||||| ||| | ||| || | | ||||| | Sbjct 58055 TCATGCGTTGCGCCGTTGGCATCCACGGCCGTGACATCGAGCGAGTTCTCCAAACGTATG 58114 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 | | ||| | | |||||| || ||||| | ||||| || |||||||| ||||| Sbjct 58115 ATCTCATGTCTGAGAGGTACTTCACTCACGCATCCCCAACTCTCTTCAACGCCGGTACAC 58174 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| ||||| | || || ||||| || || |||||||| ||||| || || |||| Sbjct 58175 CTCATGCTCAGCTCTCTTCGTGTTTCCTCGTCGCCATGAAGGACGACTCAATAGAAGGCA 58234 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||||| || || ||||| || || ||| |||||| | |||||||| || Sbjct 58235 TCTACGATACTCTTAAGGAATGCGCTATGATCAGCAAGTGTGCTGGTGGTATTGG 58289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198509608600