Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2206 179 4e-40 seq1986 179 4e-40 seq1573 102 9e-17 seq2370 93.3 5e-14 seq2372 91.5 2e-13 >seq2206 Length=69542 Score = 179 bits (198), Expect = 4e-40 Identities = 174/224 (78%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| ||||| || ||||| ||||| Sbjct 41280 ATGCAAATCTTCGTCAAGACCCTCACGGGTAAGACGATTACCCTGGAGGTCGAGTCGTCC 41221 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || |||||||||||||| ||||||||||| ||||| Sbjct 41220 GACACCATTGACAACGTGAAGGCAAAGATTCAGGACAAGGAAGGAATTCCTCCCGACCAA 41161 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| || || ||||| ||||| |||| ||||| || | |||||||| Sbjct 41160 CAGCGTCTCATTTTCGCCGGGAAGCAGCTCGAAGATGGGCGTACTCTTTCCGACTATAAC 41101 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT-----AGTCTTGCGTCTT 27624 | || ||||| || ||||| || || |||||| |||||| Sbjct 41100 ATTCAGAAGGAGTCTACTCTCCACCTTGGTAAGTCTTTCGTCTT 41057 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || ||| | ||||| ||||| Sbjct 41508 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACTTTGGAGGTGGAGTCTTCC 41449 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || |||||||||||||| || |||||||| |||||| Sbjct 41448 GACACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAG 41389 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| |||||||||||||| | |||||| || | ||||| || Sbjct 41388 CAACGTCTGATCTTCGCTGGCAAGCAACTCGAGGACGGTCGTACTCTTTCTGACTACAAC 41329 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || || || ||||| || || | ||||| || ||||| Sbjct 41328 ATTCAAAAAGAGTCTACACTTCACCTCGTGCTTCGTCTCCGTGGTGG 41282 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || |||||||| |||||||||||||| ||||| Sbjct 42075 AATGCAAATCTTCGTGAAGACCCTCACTGGCAAGACCATTACTCTTGAGGTCGAGTCCTC 42016 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | ||||| ||| | ||||| || || || ||||||||||| Sbjct 42015 TGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGG 41971 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| ||||| || | ||||| ||||| || || || ||||||||||| Sbjct 41793 AATGCAGATCTTCGTCAAAACCTTGACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTC 41734 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | ||| | ||| | || || |||||||| ||||||||||| Sbjct 41733 TGACACCATCGACAATGTCAAAGCAAAAATTCAAGACAAGGAGGG 41689 >seq1986 Length=559288 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 253864 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGCCT 253805 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| || || || || ||||| Sbjct 253804 GACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 253745 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | ||||||||||| ||||| || ||||||| |||||||||| | ||||| || Sbjct 253744 CAACGATTGATTTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACCCTATCGGACTACAAC 253685 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||||||||| || ||| | ||||| || || || Sbjct 253684 ATTCAGAAGGAATCCACTCTTCACCTTGTCCTCCGTCTCCGTGGCGG 253638 Score = 165 bits (182), Expect = 9e-36 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| Sbjct 253133 ATGCAAATTTTTGTCAAGACGCTCACCGGAAAGACCATTACTCTTGAGGTTGAGTCTTCG 253074 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || || || || || || Sbjct 253073 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATACCCCCTGATCAA 253014 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| ||||| | ||||||| ||| || || | || || || Sbjct 253013 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACTCTCTCGGATTACAAC 252954 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || |||||||| || Sbjct 252953 ATCCAGAAGGAGTCGACTCTTCACCT 252928 Score = 165 bits (182), Expect = 9e-36 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||| ||||| ||||| |||||||| ||||| Sbjct 253636 ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATTACACTTGAGGTCGAGTCGTCG 253577 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 253576 GATACTATCGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 253517 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| ||||| ||||| ||||| |||| ||||||||| | || || || Sbjct 253516 CAACGTCTTATTTTCGCTGGAAAGCAGCTCGAAGATGGTCGTACCCTCTCCGATTACAAC 253457 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || |||||||| || Sbjct 253456 ATCCAGAAGGAGTCAACTCTTCACCT 253431 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | ||||| || || || || || || || ||||| Sbjct 253361 ATGCAAATCTTCGTGAAGACTTTAACCGGAAAAACGATAACGCTCGAAGTCGAGTCTTCG 253302 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || |||||||||||||| || || || || |||||| Sbjct 253301 GACACCATCGACAATGTAAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAG 253242 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||||||||| || || ||||| |||| |||||||| | || ||||| Sbjct 253241 CAACGTCTTATTTTTGCTGGAAAACAGCTCGAAGATGGCCGTACCCTCTCCGATTATAAC 253182 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || ||||| || ||| | |||||||| || || Sbjct 253181 ATCCAGAAAGAGTCGACCCTTCACCTTGTCCTCCGTCTTCGTGGAGG 253135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| ||||| || ||||| || || |||||||| ||||| Sbjct 254198 ATGCAGATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCCTTGAGGTCGAGTCCTCC 254139 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||||| || | || || || ||||||||||||||||| Sbjct 254138 GATACCATTGATAACGTCAAAGCCAAGATTCAGGACAAGGAGGG 254095 >seq1573 Length=133326 Score = 102 bits (112), Expect = 9e-17 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| ||| || || || || || ||||| |||| || ||||| ||| |||| || Sbjct 59229 CATGAAGGTGTCGGCGAGACCTTGCACACCGATACCGATGGGACGGTGACGCATGTTGGA 59170 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 || ||||| |||| || || |||| |||||| | |||||| |||||| | Sbjct 59169 ACGACGAGCCTCAGGAACAGGATAGTAGTTGACATCGATTATGCGGTTGAGGTTGAACGC 59110 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC--ACAAAT 80892 |||||| || ||||||||||| |||| ||||||||||| || | | || || Sbjct 59109 GACAACCTTGGTGACATCATGAAGCTTCTTGAAGTCGAATTG--ACCTTTGCGGACGAAG 59052 Query 80893 GCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 | || || || ||||| || || ||||| |||||| || |||| | | || Sbjct 59051 GTAGGCAACGC-GAGGGATGCGAGGTTGCATACGGCCGTTTCATCAGGGGAAGAGTATTC 58993 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 | ||||| ||||| | || |||||||| || ||| ||||| || || || ||||| Sbjct 58992 CATAATTTCGGTGCAAAGGTTGGAAGACTTGATGACACCAAGGTTCTTTTGATTGGACTT 58933 Query 81012 GGC 81014 || Sbjct 58932 TGC 58930 >seq2370 Length=49093 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 ||||||| || |||||||||||||| || |||||||| || || ||||| |||| || | Sbjct 22966 GAATTCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGAAAACAGCTCGAAGATGGCCGCA 22907 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 | || ||||| || | || ||||| || || ||||| | || |||||||| |||| Sbjct 22906 CTCTCAGTGACTACAACATTCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGTCTCCGCG 22847 Query 27629 GTGG 27632 |||| Sbjct 22846 GTGG 22843 >seq2372 Length=127870 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24765 GAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAG 24824 ||||| || ||| |||||| || ||||| || ||||| || || || || | ||||| Sbjct 113770 GAGACTCCTCAGACGGAGAAAACGCCATTCTACCCGCGTAGTCCATACGGCTGCGCAAAG 113711 Query 24825 GTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAAC 24884 ||| ||||| ||||| || ||||||||||| || |||| || ||||| || ||| Sbjct 113710 TTGTACGCGTTTTGGATCACTGTCAACTACCGTGAAGCATATGGCATGTATGCGTGTAAC 113651 Query 24885 GGAATTCTGTTCAACCATGA 24904 || || || |||||||| || Sbjct 113650 GGTATCCTCTTCAACCACGA 113631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570292171453840