Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15]
2,557 sequences; 57,384,356 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1986 132 4e-26
seq2206 104 2e-17
>seq1986
Length=559288
Score = 132 bits (146), Expect = 4e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || ||||| || || || ||||| ||| | ||||||||||| || || | ||
Sbjct 253134 CATGCAAATTTTTGTCAAGACGCTCACCGGAAAGACCATTACTCTTGAGGTTGAGTCTTC 253075
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | ||||| || || || ||||| ||||||||||| || |||||
Sbjct 253074 GGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATACCCCCTGATCA 253015
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||||||| || | || || || || ||||| || || || | || ||||||||
Sbjct 253014 ACAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACTCTCTCGGATTACAA 252955
Query 27167 CATTCAAAAGGAGTCGAC 27184
||| || |||||||||||
Sbjct 252954 CATCCAGAAGGAGTCGAC 252937
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||| ||||||| ||| | ||||| ||||| || || ||||
Sbjct 253636 ATGCAGATCTTTGTGAAGACTTTGACCGGAAAGACCATTACACTTGAGGTCGAGTCGTCG 253577
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || || || ||||| || || || ||||| || ||
Sbjct 253576 GATACTATCGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 253517
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||| | || | ||| || || || | ||||| || ||| | ||||||||||||
Sbjct 253516 CAACGTCTTATTTTCGCTGGAAAGCAGCTCGAAGATGGTCGTACCCTCTCCGATTACAAC 253457
Query 27168 ATTCAAAAGGAGTCGAC 27184
|| || |||||||| ||
Sbjct 253456 ATCCAGAAGGAGTCAAC 253440
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||| || || || || || || || |||||| | || ||||| || || || || |
Sbjct 253865 CATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGCC 253806
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | || || | ||||| || || || ||||| |||||||| || ||||| ||
Sbjct 253805 TGACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCA 253746
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| || || || | || || || || | || || || ||| | || || |||||
Sbjct 253745 ACAACGATTGATTTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACCCTATCGGACTACAA 253686
Query 27167 CATTCAAAAGGAGTCGAC 27184
|||||| ||||| || ||
Sbjct 253685 CATTCAGAAGGAATCCAC 253668
>seq2206
Length=69542
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || || ||| | || ||| | || ||||| | |||
Sbjct 41508 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACTTTGGAGGTGGAGTCTTCC 41449
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || ||||| ||||| |||||||| || || || ||
Sbjct 41448 GACACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAG 41389
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||| | || | ||| ||||| ||| | || ||| || || |||| || ||||||
Sbjct 41388 CAACGTCTGATCTTCGCTGGCAAGCAACTCGAGGACGGTCGTACTCTTTCTGACTACAAC 41329
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||| ||||| || | || | || | ||| | || ||||| ||
Sbjct 41328 ATTCAAAAAGAGTCTACACTTCACCTCGTGCTTCGTCTCCGTGGTGGTAT 41279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434904498920640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |