Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1986 107 1e-18 seq2206 104 2e-17 seq2370 84.2 1e-11 >seq1986 Length=559288 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || ||||| ||||| || || ||||| || ||||| || || Sbjct 253133 ATGCAAATTTTTGTCAAGACGCTCACCGGAAAGACCATTACTCTTGAGGTTGAGTCTTCG 253074 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| |||| || |||||| Sbjct 253073 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATACCCCCTGATCAA 253014 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| || || || |||| || | |||||| | ||||||||| Sbjct 253013 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGCACTCTCTCGGATTACAAC 252954 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 252953 ATCCAGAAGGAGTCGAC 252937 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || ||||||||||| || |||||||| || || || Sbjct 253361 ATGCAAATCTTCGTGAAGACTTTAACCGGAAAAACGATAACGCTCGAAGTCGAGTCTTCG 253302 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || ||| ||||| ||||| | || || || || Sbjct 253301 GACACCATCGACAATGTAAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAG 253242 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || ||||| || ||||| | || || | |||||| ||| Sbjct 253241 CAACGTCTTATTTTTGCTGGAAAACAGCTCGAAGATGGCCGTACCCTCTCCGATTATAAC 253182 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 253181 ATCCAGAAAGAGTCGAC 253165 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| || || || ||||||||||| || || || | Sbjct 253864 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGCCT 253805 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | ||||| || ||| Sbjct 253804 GACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAA 253745 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||| || || || || || || | || || || || |||||| Sbjct 253744 CAACGATTGATTTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACCCTATCGGACTACAAC 253685 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 253684 ATTCAGAAGGAATCCAC 253668 >seq2206 Length=69542 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || ||||||||| | || || || || | Sbjct 41508 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACTTTGGAGGTGGAGTCTTCC 41449 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| ||||| | || || || || Sbjct 41448 GACACCATCGACAATGTGAAGGCCAAGA-TTCAGGACAAGGAAGGCATTCCTCCTGACCA 41390 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || ||||| ||||| || |||| || ||| | || ||||| Sbjct 41389 GCAACGTCTGATCTTCGCTGGCAAGCAACTCGAGGACGGTCGTACTCTTTCTGACTACAA 41330 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| ||||||||||| ||| Sbjct 41329 CATTCAAAAAGAGTCTACA 41311 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||||||||| || ||||| || || || || || || | Sbjct 41280 ATGCAAATCTTCGTCAAGACCCTCACGGGTAAGACGATTACCCTGGAGGTCGAGTCGTCC 41221 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| ||| ||||| ||||| | || || || ||| Sbjct 41220 GACACCATTGACAACGTGAAGGCAAAGATTCAGGACAAGGAAGGAATTCCTCCCGACCAA 41161 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || || || ||||| | || ||| | ||| || ||| Sbjct 41160 CAGCGTCTCATTTTCGCCGGGAAGCAGCTCGAAGATGGGCGTACTCTTTCCGACTATAAC 41101 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 41100 ATTCAGAAGGAGTCTAC 41084 >seq2370 Length=49093 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||||||||| ||||| || |||||||| ||||| ||| | Sbjct 23121 ATGCAGATTTTCGTCAAAACCCTCACGGGTAAAACCATTACTCTCGAGGTTGAATCCTCA 23062 Query 23671 GACACTGTTGA-AATATTAAAACAAAAA 23697 ||||| | || ||| | ||| | |||| Sbjct 23061 GACACCATCGACAATGTCAAAGCCAAAA 23034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999066458956