Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2416 140 5e-28 seq2123 127 3e-24 >seq2416 Length=74831 Score = 140 bits (154), Expect = 5e-28 Identities = 344/516 (67%), Gaps = 8/516 (2%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 || || || || || | |||||||| || || ||||| || | ||| || || || ||| Sbjct 67209 TCATTGGAGAAGGTCAAGCCAGGCATCAGCCCTCGCTTCTTCATCCAGAAGATGGCGGCG 67150 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || || || || ||||| ||||||||||| || || || |||||||| | || ||| | Sbjct 67149 AATGAACCGGAGAAGAAAATGCCTTCTACCGCTGCAAACGCGACAAGGCGTTCACCGAAT 67090 Query 46792 CTGGCATCATTAT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | | | || | || ||||| | ||||||| |||||||| ||| |||||||| Sbjct 67089 GTTGAACGCTTGTCCGAGATCCATCGGAGAGCCCAGTCAGCCTTACGCTTGACACAAGGA 67030 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATC-ACTATCTTTAACATATGTATC 46907 || ||||| | ||||| ||||| ||| | || | ||||| | || || || Sbjct 67029 ATGGTTTCAACAGCATCGAAGAG-GTGTTCGCGTTGTCGAGGGTCTTTGATGTAGGTGTC 66971 Query 46908 TATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 || | || || | || |||||||| ||||| || ||||| || ||||| || Sbjct 66970 GATGAGGAGGGAGTATGTCTCGGAATGAATATTTTCCATCATGATCTGGAAACCGTAGAA 66911 Query 46968 ACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCAC 47027 ||| | ||||| | ||| || || | | || ||||| | || || || || Sbjct 66910 ACAACGCGCTTCGGCGGCCTGAACTTCATTTGAGAAACGTTCCACGAGGTTTTCGTTAAC 66851 Query 47028 TATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGT 47087 || || || ||| || || || || | ||||| || || | || | | Sbjct 66850 AATGCCGTCTGAAGCGGCGAAGAAAGCGAGGACATGAGAGATGAAGTGACGCTCGTTGTC 66791 Query 47088 AGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 47144 | ||| | || |||||||| | | ||||| |||| ||| | |||||| || ||||| Sbjct 66790 ATTCATGCGGTTGTTCCAGTCGTGCAAGTCTTTGGATAGATCCATTTCTTCCGCAGTCCA 66731 Query 47145 GAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 |||||| || ||||||||||| ||||| | ||| || Sbjct 66730 GAATGATGCTTCTGCTTTTTTGTACATTTGCCAGAT 66695 >seq2123 Length=425399 Score = 127 bits (140), Expect = 3e-24 Identities = 429/656 (65%), Gaps = 18/656 (3%) Strand=Plus/Plus Query 46537 GTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT-CGATGTTACTGTTTCCTC 46595 || || |||||||| ||||| |||| || || | || || || | | ||||| || Sbjct 271553 GTGAGGAACTCTTGCTCAATCTTGACCGCTTCGGTAATGATGCGCT-TGACTGTATCGGG 271611 Query 46596 ACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTC 46655 || || || ||||||| | || | | || |||||||| || | ||| || Sbjct 271612 GTGGGGGCGACGCTTCAAATGACTGAAGAGAAGGCAAGCAAAATCGGTGTGCATGCCCTC 271671 Query 46656 ATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAG 46715 || | ||||| | ||| || || || || | || ||||| | |||||||| || | Sbjct 271672 GTCACGGCTAATGAGTTCATTGGAGAACGTCAATCCGGGCATCAAACCACGCTTCTTCAT 271731 Query 46716 CCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGAC 46775 ||| || ||||| ||||| || || || ||||| || || || || || ||||| || || Sbjct 271732 CCAGAAAATAGCAGCGAACGACCCCGAGAAGAAGATACCCTCGACGGCAGCGAAGGCAAC 271791 Query 46776 AAGTCTCTCTCCGTAACTGGCATCAT-TAT--GA-ATCCACCTTTGAGCCCAATCAGCCT 46831 || | ||| || | | | | | | ||| || ||||| | ||||||| || |||| Sbjct 271792 CAGACGCTCACCAAAGATCG-AGCGTGTATCGGAGATCCATCGAAGAGCCCAGTCGGCCT 271850 Query 46832 TTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt---ttCATCAC 46888 | ||| || || || || ||||| | |||| ||||| || || || | Sbjct 271851 TGCGCTTGACGCAGGGGATGGTTTCAACGGCATCGAAGAG---GTGTTCCCGTTGGCGAG 271907 Query 46889 TATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAG 46948 |||||||| || || || || | || || |||| || |||||||| || || Sbjct 271908 CATCTTTAATGTAGGTGTCGATGAGGAGTGAGTATGTTTCAGAGTGAATGTTCTCCATCA 271967 Query 46949 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTT 47008 || || || ||||| || || | ||||||| | ||| || || || | || || | Sbjct 271968 TGATTTGGAACCCGTAGAAGCACCGCGCTTCAGCAGCCTGCACTTCATTAGAGAAACGCT 272027 Query 47009 CAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTA 47067 | ||| | |||||| || || || |||||| ||| || || ||||| | || ||| Sbjct 272028 C-GACGAGATTCTCGTTGACAATCCCATCAGAAGCGGCGAAGAATGCGAGGACGTGTGAG 272086 Query 47068 ATAAAATATTTTTCAT---CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATA 47124 || |||| || | || | | | || |||||||| | | || || || | | Sbjct 272087 ATGAAATGACGCTCGTTTTCGTTCATGCGGTTGTTCCAGTCGTGCAAGTCCTTCGACAGA 272146 Query 47125 TCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 || | ||||| || ||||||||||| || || || || || ||||| | ||| || Sbjct 272147 TCCATCTCTTCGGCGGTCCAGAATGAGGCTTCGGCCTTCTTGTACATTTGCCAGAT 272202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712911612834240