Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Moniliophthora_20roreri_20[genbank_20GCA_5F001466705.1_202015-12-15] 2,557 sequences; 57,384,356 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1986 183 7e-41 seq2206 167 6e-36 seq2370 96.9 8e-15 seq2402 93.3 1e-13 seq2286 89.7 1e-12 >seq1986 Length=559288 Score = 183 bits (202), Expect = 7e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||| | || ||||||||||| || ||||| || || || ||| Sbjct 253358 CAAATCTTCGTGAAGACTTTAACCGGAAAAACGATAACGCTCGAAGTCGAGTCTTCGGAC 253299 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||||||||| ||||| ||||| || ||||||||| Sbjct 253298 ACCATCGACAATGTAAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAGCAA 253239 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || |||||||||||||||||||| | || || ||||||||||| || Sbjct 253238 CGTCTTATTTTTGCTGGAAAACAGCTCGAAGATGGCCGTACCCTCTCCGATTATAACATC 253179 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || ||||| Sbjct 253178 CAGAAAGAGTCGACCCTTCACCTTGT 253153 Score = 145 bits (160), Expect = 2e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || ||||| || || || || ||||| || || || Sbjct 253633 CAGATCTTTGTGAAGACTTTGACCGGAAAGACCATTACACTTGAGGTCGAGTCGTCGGAT 253574 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| || || ||||| || ||||||||| Sbjct 253573 ACTATCGACAACGTAAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAGCAA 253514 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| ||||| |||||||||||||| | || || ||||||| ||| || Sbjct 253513 CGTCTTATTTTCGCTGGAAAGCAGCTCGAAGATGGTCGTACCCTCTCCGATTACAACATC 253454 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| || || |||| Sbjct 253453 CAGAAGGAGTCAACTCTTCACCTTG 253429 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || ||||| |||||||| || | ||| Sbjct 253861 CAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGCCTGAC 253802 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| ||||| ||||| || ||||| ||| Sbjct 253801 ACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAACAA 253742 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || ||||| ||||| || ||||| | || || | || || ||| | Sbjct 253741 CGATTGATTTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACCCTATCGGACTACAACATT 253682 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || ||||| Sbjct 253681 CAGAAGGAATCCACTCTTCACCTTGT 253656 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || ||||| || |||||||| ||||| || ||| || Sbjct 254195 CAGATTTTCGTCAAGACCCTTACTGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGAT 254136 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 ||||| || ||||||||| |||||||||||||| || || Sbjct 254135 ACCATTGATAACGTCAAAGCCAAGATTCAGGACAAGGAGGG 254095 >seq2206 Length=69542 Score = 167 bits (184), Expect = 6e-36 Identities = 160/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || ||||| ||||| ||||| || || ||| Sbjct 41277 CAAATCTTCGTCAAGACCCTCACGGGTAAGACGATTACCCTGGAGGTCGAGTCGTCCGAC 41218 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||||||||||||| |||||||| ||||| ||||| || Sbjct 41217 ACCATTGACAACGTGAAGGCAAAGATTCAGGACAAGGAAGGAATTCCTCCCGACCAACAG 41158 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || |||||||||||||| | |||||| |||| |||||| | Sbjct 41157 CGTCTCATTTTCGCCGGGAAGCAGCTCGAAGATGGGCGTACTCTTTCCGACTATAACATT 41098 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 41097 CAGAAGGAGTCTACTCTCCACCTTG 41073 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||| | |||||||| || ||| Sbjct 41505 CAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACTTTGGAGGTGGAGTCTTCCGAC 41446 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||||||||| ||||| || ||||| ||||||||| Sbjct 41445 ACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAGCAA 41386 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || || ||||| || || | |||||| | || || ||| | Sbjct 41385 CGTCTGATCTTCGCTGGCAAGCAACTCGAGGACGGTCGTACTCTTTCTGACTACAACATT 41326 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| || ||||| || || || Sbjct 41325 CAAAAAGAGTCTACACTTCACCTCGT 41300 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 ||||||| || || || |||||||| |||||||||||||| |||||||| || ||| | | Sbjct 41917 GAATCCCCCCTGATCAACAACGACTCATCTTCGCCGGAAAGCAGCTCGAGGACGGACGCA 41858 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | ||| | ||||| ||| | || ||||| || || || |||||||| ||| | ||| Sbjct 41857 CCCTTTCTGATTACAACATTCAGAAAGAGTCGACCCTCCATCTTGTCTTGCGTCTC 41802 >seq2370 Length=49093 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| ||||| || ||||| || || |||||||| ||| ||||||| Sbjct 23118 CAGATTTTCGTCAAAACCCTCACGGGTAAAACCATTACTCTCGAGGTTGAATCCTCAGAC 23059 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || |||||| || || |||||||| ||||| Sbjct 23058 ACCATCGACAATGTCAAAGCCAAAATCCAGGACAAGGAAGG 23018 >seq2402 Length=202812 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| ||||||||| || ||| Sbjct 187182 CAGATTTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTTGAGGTGGAATCGTCTGAC 187241 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || ||||| ||||| ||||||||||| || Sbjct 187242 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAGGG 187282 >seq2286 Length=139373 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA-GCTCAGACACCATCGAGAA 177994 || || ||||| ||||| || ||| ||| || | || ||| || || ||||| || Sbjct 67636 AAGACACTCACCGGAAAGACTATCCGCCTTGAAGCGGCGCCGCTT-GAAACTATCGACAA 67578 Query 177995 CGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTT 178054 |||| ||||| ||||| | | ||||| ||||| || | || ||||||||||| Sbjct 67577 GATCAAGGTCAAGATACAGGATCTAAATGGAATACCTCCAGATGAACAGCGACTTATCTT 67518 Query 178055 CGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATC 178114 ||||||||||||| | || |||||| | || ||| | || || ||| | | ||| | || Sbjct 67517 CGCCGGAAAACAGTTGGAGGATGGACGTACACTTTCTGACTACAACATTGAGAAAAATTC 67458 Query 178115 AACACTGCATCTTGTT 178130 ||| | ||||| ||| Sbjct 67457 AACGATTCATCTGGTT 67442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203691763885058