Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq109 132 5e-26 seq94 111 2e-19 seq17 111 2e-19 seq42 95.1 1e-14 >seq109 Length=150709 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| || |||||| | || ||| || |||||| ||||| || Sbjct 8867 AAGGCCGATTGGGCTCTCAAGTGGATCTCGTCCAAGGAGTCCACCTTCGCTGAGCGACTC 8926 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || |||||| | ||||||||||| ||||||| || || ||||| |||| || ||| Sbjct 8927 GTCGCCTTCTCCGCCGTCGAGGGAATCTTCTTCTCTGGATCGTTCGCTTCCATCTTCTGG 8986 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| || || || |||||||| || || ||| ||||||| | ||||| |||||| Sbjct 8987 CTCAAGAAGCGAGGACTAATGCCCGGACTTACGTTCTCCAACGAGTTGATCTCGAGGGAC 9046 Query 117164 GAGGGTCTGCA 117174 ||||| || || Sbjct 9047 GAGGGACTTCA 9057 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 || |||||| ||||| || || || ||||| || |||||| |||||||||||||| Sbjct 8464 CACTTCATCTCCCACGTCCTCGCTTTCTTCGCTGCTTCCGACGGTATCGTCAACGAGAAC 8523 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTT 116860 || ||||||| ||| | |||||||| ||| |||||||| || ||||||||||| || Sbjct 8524 CTCATCGAGCGATTCTCGCAGGAGGTTCAGTCCGCCGAGGCTCGATGCTTCTACGGTTTC 8583 Query 116861 CAGATC 116866 |||||| Sbjct 8584 CAGATC 8589 >seq94 Length=713063 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || ||||| || || || ||||| || ||||||||| | || || || | | |||| | Sbjct 173153 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 173094 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| |||||| || || | ||||| ||||| ||||| | || ||||| || Sbjct 173093 ATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCG 173035 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 |||||||| ||| || || ||||| || || | || ||||| || ||||||||||| Sbjct 173034 ACTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCA 172975 Query 40875 GAAGGAGGCCACGCTGCA 40892 ||||||| |||| || || Sbjct 172974 GAAGGAGTCCACCCTTCA 172957 >seq17 Length=1662258 Score = 111 bits (122), Expect = 2e-19 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || ||||| ||| |||| ||||| || |||||| | | | |||| |||| Sbjct 951134 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACG-TCAA 951076 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| || || ||||| | || |||||||||||||||| ||| || Sbjct 951075 GGCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGG 951016 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || || || || |||| || |||||| ||| |||||||||||||| Sbjct 951015 AAAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAA 950968 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || ||||| ||| |||| ||||| || |||||| | | | |||| |||| Sbjct 950315 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACG-TCAA 950257 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | |||||||| ||| | |||| ||| || Sbjct 950256 GGCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 950197 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || ||||| || || | || || ||| ||||||||||||||||| Sbjct 950196 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAA 950149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || |||||||| |||| || ||| | |||||| | | | |||| |||| Sbjct 950744 CTTACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACCATCGACAACG-TCAA 950686 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | |||||||| ||| | |||| ||| || Sbjct 950685 GGCCAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 950626 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || || | || || ||| || |||||||||||||||| Sbjct 950625 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGATTACAACATCCAGAAGG 950576 >seq42 Length=1914076 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| |||||| | || ||||| |||||||||| ||| || || ||||| || Sbjct 595822 GACAAGGAGGGTATCCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGCAGCTCGAG 595763 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| || ||||| || |||||||||||||||||| |||| || || Sbjct 595762 GACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTCCA 595713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218124479920