Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq94 118 9e-22 seq42 104 2e-17 seq17 98.7 9e-16 >seq94 Length=713063 Score = 118 bits (130), Expect = 9e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || ||||||||||| | || || ||||||| Sbjct 172951 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCG 173010 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| ||||||| ||||||||||| ||||| || ||||||||||| Sbjct 173011 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 173070 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| ||| ||||| | ||| | || || Sbjct 173071 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTC 173130 Query 118710 CCGGTCAGAGTTTTTACAAAAATCT 118734 || || || || || || || |||| Sbjct 173131 CCCGTAAGGGTCTTAACGAAGATCT 173155 >seq42 Length=1914076 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || | |||||||||| || ||||| || || ||||||||||| Sbjct 595687 TACCTCCTCGGAGTCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCG 595746 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||||||||| ||||| ||| ||||||| ||||||||||| || | Sbjct 595747 AAAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCAGGGG 595806 Query 118630 GTATGCCCTCCTTGTCT 118646 | || |||||||||||| Sbjct 595807 GGATACCCTCCTTGTCT 595823 >seq17 Length=1662258 Score = 98.7 bits (108), Expect = 9e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || |||||||||||| | || || |||||||| || ||||||||| ||| Sbjct 950966 CTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGA 951025 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||| || |||||||| ||||| || || |||||||| || || || || | | Sbjct 951026 TGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTAT 951085 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||| |||||| | | ||||||||||| ||| | || || ||||| || Sbjct 951086 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAG 951134 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || |||||||| || | ||| || |||||||||||| ||||||||| ||| Sbjct 950147 CTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 950206 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | |||||||| || ||||| || |||||||| || || || || || | | Sbjct 950207 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTAT 950266 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||| |||||| | | ||||||||||| ||| | || || || || || Sbjct 950267 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCAGTGAG 950315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829517019564