Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq94 111 2e-19 seq17 87.8 2e-12 >seq94 Length=713063 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| | ||| | ||||| || | ||| |||||| || || |||||||| | Sbjct 172932 TCCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 172991 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || |||||||| |||||||| |||||||||||||| || | || Sbjct 172992 AAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGG 173051 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||| || |||| ||| | | | ||||| || |||| Sbjct 173052 GATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCA 173110 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGAT 43177 | || | |||||||| || ||||| || ||||| || ||||| Sbjct 173111 CCTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGAT 173153 >seq17 Length=1662258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || |||||||| | ||||| || | || || |||||||| |||||||| | Sbjct 950576 CCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 950635 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | | |||||| ||| ||| || |||| ||| | Sbjct 950636 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTG 950694 Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | | |||||| |||||| || |||| |||||||| || || || || Sbjct 950695 TCGATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAG 950744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816406330760