Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_005345.2 Length=49220 Score E Sequences producing significant alignments: (Bits) Value seq105 336 7e-88 >seq105 Length=60549 Score = 336 bits (372), Expect = 7e-88 Identities = 431/580 (74%), Gaps = 12/580 (2%) Strand=Plus/Plus Query 45047 GGATGATTCAGACGATCGCGTTCGACGTCGGCGAGACACTCGTGAGCGATGACCGCTACT 45106 || ||||| |||| |||| |||||| ||||||||||| ||| | | || ||||| | | Sbjct 26504 GGGTGATTGAGACCATCGTGTTCGATGTCGGCGAGACGCTCATCCGTGACGACCGGTCTT 26563 Query 45107 GGGCATCGTGGGCCGACTGGCTCGGCGCACCGAGGCATACCGTGTCGGCGCTCGTCGGCG 45166 |||| |||||||| ||||||||| || ||||| || || |||| || |||||||| | Sbjct 26564 GGGCGTCGTGGGCGGACTGGCTCAACGTCCCGAGACACACGCTGTCCGCCCTCGTCGGAG 26623 Query 45167 CCGTCGTCG-CACAGGGGCGGGACAACGCGGACGCGCTGCGGCTCGTCCGACCGGGCCTC 45225 | || || | | || || |||||||| ||||||||| | ||| | | || ||||| || Sbjct 26624 CGGTTGTGGTCGCA-GGCCGGGACAATGCGGACGCGGTCCGGTTGCTGCGCCCGGGGATC 26682 Query 45226 GACGTCGCAGCCGAGTATGCCGCCCGAGAGGCTGCCGGCCGCGGCGAGCACCTCGACGAC 45285 ||| |||| |||||||| ||| || ||||| || ||||| ||||||||||| || || Sbjct 26683 GACATCGCCGCCGAGTACCGCGCTCGCGAGGCCGCGGGCCGAGGCGAGCACCTTGATGAG 26742 Query 45286 ACCGACCTGTACGACGACGTCCGCCCCGCCCTCGCCGCGCTGCAGGCACTC-GGCGTCCG 45344 ||| || ||||| ||||| || ||||| || | || || | | || | |||||||| Sbjct 26743 GGCGATCTCTACGATGACGTGCGGCCCGCTCTGTCTGCCCTTC-GCCAGGCGGGCGTCCG 26801 Query 45345 GGTGATCATCGCCGGGAATCAGACCATCCGAGCCGGCGAGCTGCTGCGCGGCCTCGATCT 45404 ||| || ||||||| ||||||| || |||||| |||||||||| | ||| || || Sbjct 26802 GGTCGTCGTCGCCGGTAATCAGAGTGCACGCGCCGGCCAGCTGCTGCGGGCCCTGGACCT 26861 Query 45405 GCCCGTCGACGTGATCGCCACGTCCGGCGAGTGGGG-GTGTGCCAAGCC-CACGCGCGAG 45462 ||||| |||| ||||||||||||| | |||||||| ||| |||||||| || || ||| Sbjct 26862 GCCCGCCGACCTGATCGCCACGTCGGCAGAGTGGGGCGTG-GCCAAGCCGCAGTCG-GAG 26919 Query 45463 TTCTTCGACCGCGTCGTCGACGTCGC--AGGCACCCCCCGGCAGAGCATTCTCTACGTGG 45520 |||||| |||||| |||| || || |||| ||| || || ||| |||| || | Sbjct 26920 TTCTTCCGGCGCGTCATCGAGGTGGCCGAGGC-CCCGCCAGC-CCGCACCGTCTATGTCG 26977 Query 45521 GCGACCACCCGGCAAACGACACGATCCCGGCCGCTGCCGCCGGGCTGCGGACGGCACACC 45580 | || |||||||| ||||| ||| || || || || |||| || ||||||| Sbjct 26978 GAGATCACCCGGCGAACGATGTCCACCCCGCGAAAGCGGCTGGCTTGCGCACCGCACACC 27037 Query 45581 TGCGGCGCGGGCCGTGGGGTCACCTGTGGGCCGACGACCC 45620 || |||| || || ||||| ||| | ||||| || ||||| Sbjct 27038 TGAGGCGTGGCCCCTGGGGGCACTTCTGGGCTGATGACCC 27077 Score = 228 bits (252), Expect = 3e-55 Identities = 482/704 (68%), Gaps = 19/704 (3%) Strand=Plus/Plus Query 46216 CGCCGACGCTATCGCCTACAAGTACGGCGCGAACGACCTTTCCGCCCGGTTGATCGACGT 46275 ||||||||| |||||||||| |||||| ||||||| || || || ||||||| | Sbjct 27736 CGCCGACGCAGCCGCCTACAAGCTCGGCGCACACGACCTCTCGGCACGCCTGATCGAACT 27795 Query 46276 CCTGCGTTGGGCCGCTGCCCGGTCCGCCGATCCGCTCGTCGAGGCCACCGCCGCGTATGT 46335 |||| |||||||| || ||| || || || | || ||| ||||| || Sbjct 27796 GATGCGATGGGCCGCGGCGGCAGCCGAGGACCCCCTGCTGACCGCATCCGTGGCGTACGT 27855 Query 46336 GCGCACAGAAACGTTCTTCGCCGCCCGAGCGCACGCTGTCGGCCTCGCG-GCGCTGGAGC 46394 |||||| || || |||||| | ||||| || |||| | || || ||| || || || Sbjct 27856 GCGCACCGAGACCTTCTTCCCGGCCCGCGCCTACGCCGCAGGTCT-GCGCGCCCTCAGGC 27914 Query 46395 AGGCGATCGAGCGCA-CGCCGGCGCCGACAAGCCGTACCGAGGC-CGCCGCGCGTGGCGC 46452 |||| || || ||| | || || ||| | | ||| | || || ||||||||| || || Sbjct 27915 AGGCCATTGA-CGCGGCACCCGCACCGGCGA-CCGCAGCGCAGCGCGCCGCGCGCGGGGC 27972 Query 46453 GCTCCACATGCGGGCCGCTGTCATCGCCGGGCGGGCG--GGAGACAT-CGGCGCCGCCGA 46509 || |||||| ||||||| ||||||||||| ||||| ||| || | |||| |||| Sbjct 27973 ACTGCACATGAGGGCCGCCGTCATCGCCGGCCGGGCCAAGGACGCAGACAGCGCGGCCG- 28031 Query 46510 CACCCACATCGACAACGCCCGCGGCCTCGCCGATCAAGTCGGCCGCGAGGGTACCTACCT 46569 | ||| | || |||||| |||| ||||| || || | | ||| || ||| Sbjct 28032 --CGCACCTGAACGACGCCCAGCGCCTGGCCGAGCAGGT-GAAGGAGAGCGTG--TACTA 28086 Query 46570 CGGTACCGCGTTCGGCCCCGACTCCGTCCGCGCGCATGAGGTATCCCTCGCCGTCAGCCT 46629 ||| ||||||||||| |||||||| || || || ||||||| |||| |||||||| Sbjct 28087 CGGCACCGCGTTCGGGCCCGACTCTGTGCGGATTCACCAGGTATCGGTCGCGGTCAGCCT 28146 Query 46630 CGGCCCCGAGCACGTCGACCGGGCACTCGCCGTCGCCACCGCGTGGAAACCCCCCACGTC 46689 ||| || ||||| | ||| || | |||| | || |||||| || || || | Sbjct 28147 GGGCGGTGACCACGTGAGCAAGGCCCTGGACGTCACACACGAGTGGAAGCCTCCGACCAC 28206 Query 46690 GATGCCAGCGGAACGGCGCAGCGGCGTGTACATCGAGCTCGCTCGCGCGCAGGACTGGGC 46749 | | || || || ||| ||| | ||||||||||| || || || ||| |||||| Sbjct 28207 CCTCGCCGCAGAGCGCCGCTCAGGCTTCTACATCGAGCTGGCGCGTGCTCAGCTCTGGGC 28266 Query 46750 AGGCCTACACCGGGACGCGTTCGAGAGTCTCCGA--GTGGCACGCGCTGCAGCACCCCAG 46807 || | | | | ||||||| ||||| | || || || ||| ||||| ||| Sbjct 28267 GGGTATGCCCGACGGCGCGTTC--GAGTCGCTGAAGGTCGCCCGCAAGATCGCACCTCAG 28324 Query 46808 CACACCCGCGAACACCCTTGGGCCCGCGAGGTCGCGACCGGGCTGCGCCGCCAAGCACGC 46867 |||||||| || ||||| |||| ||| || | ||| | |||||| |||| ||| Sbjct 28325 CACACCCGTGATCACCCCTGGGTCCGGGAAGACGCTTCGACGCTGCGGCGCCTGCGCCGC 28384 Query 46868 TCGGACGCCGAGTCGTTGACGCACTTCGCCGAGTGGATCGGCGC 46911 | ||| | ||| || ||||| |||||| |||||| || ||| Sbjct 28385 GCCGACTCGGAGACGCTGACGTCCTTCGCGGAGTGGTGCGCCGC 28428 Score = 95.1 bits (104), Expect = 4e-15 Identities = 220/324 (68%), Gaps = 21/324 (6%) Strand=Plus/Minus Query 36311 CGGCGGCAACCCGGCCGCGATCAACAACTGGGACATCAACGCGAAGAACGGCGTTCCGTC 36370 ||||||||||||| |||||||||| |||||| ||||||| |||| ||| Sbjct 46496 CGGCGGCAACCCGAACGCGATCAACCTGTGGGACTCCAACGCGGCCGCCGGCCACCCGAG 46437 Query 36371 CAAGGGTCTGATGCAGGTGATC--GACCCGACTTTCGCCGCGTACGCGGGCGCGCTCCGC 36428 | |||| || | ||| |||| || | || ||||| || ||||| ||| || || Sbjct 46436 CCAGGGCTTGCTCCAGACGATCCCGAGC--ACGTTCGCGGCCTACGCCGGCCCGTTCAAG 46379 Query 36429 GGCCGCGGCGTGTGGGACCCCCTCGCGAACATCTACGCCTCGATGCGGTACGCGCTGTCC 36488 ||||||||| | ||||| || || ||||||||||| | ||||| || | Sbjct 46378 GGCCGCGGCATCCTCGACCCGCTGGCCAACATCTACGCGGGCGTCAACTACGCCATGCAC 46319 Query 36489 CGCTACGGCTCG-CTCGCCTCGGCCT-ACAACC-GACCCGGCGGGTACGCCAACGGC--- 36542 || ||||||||| | | || || | | ||| | || || || |||||||| ||| Sbjct 46318 CGATACGGCTCGTCGTGGGTCAGCGTGATGACCAGGCCGGGTGGCTACGCCAAGGGCACG 46259 Query 36543 --GGCCGACCGCGCCC----CGGCGAA----CTGGCGTGGGTGGGCGAACGCGGCCCCGA 36592 || || |||||| ||||||| ||||||||||| || || |||||| |||| Sbjct 46258 AAGGGCG-CCGCGCGGGGTGCGGCGAAGGGCCTGGCGTGGGTTGGGGAGCGCGGCGCCGA 46200 Query 36593 GCTCGTGCGCTTCGGGGGCGGCGA 36616 ||| ||| ||| |||||||| Sbjct 46199 GCTGGTGAATTTCTCCGGCGGCGA 46176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157382087891028