Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq38 84.2 3e-12 seq145 80.6 4e-11 seq116 80.6 4e-11 seq42 80.6 4e-11 >seq38 Length=2072532 Score = 84.2 bits (92), Expect = 3e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 16467 TCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTG 16526 |||| || ||||||||||| || ||||| || |||| || || || ||||||||||| Sbjct 1380066 TCCAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAA 1380007 Query 16527 TCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 1380006 TCTCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 1379958 >seq145 Length=1718111 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| || ||||| || |||| || || || ||||||||||| || Sbjct 1638696 CAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAATC 1638755 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 1638756 TCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 1638802 >seq116 Length=1875399 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| || ||||| || |||| || || || ||||||||||| || Sbjct 562383 CAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAATC 562442 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 562443 TCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 562489 >seq42 Length=1914076 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| || ||||| || |||| || || || ||||||||||| || Sbjct 803402 CAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAATC 803343 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 803342 TCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 803296 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| || ||||| || |||| || || || ||||||||||| || Sbjct 958148 CAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAATC 958207 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 958208 TCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 958254 Score = 80.6 bits (88), Expect = 4e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 || || ||||||||||| || ||||| || |||| || || || ||||||||||| || Sbjct 1230164 CAGGGTATCACCAAGCCTGCGATCCGACGATTGGCGCGACGAGGAGGAGTCAAGCGAATC 1230105 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 |||||| || |||| || |||| || | |||| | ||| | ||||| Sbjct 1230104 TCTGGACTGATCTACGAGGAGACCCGAGGTGTTCTCAAGCTTTTCCT 1230058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075047310731