Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq17 100 3e-16 seq94 96.9 3e-15 >seq17 Length=1662258 Score = 100 bits (110), Expect = 3e-16 Identities = 125/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 131045 CCTTT-TGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| || |||||||||||| | ||| || |||||| || ||||| || ||| || Sbjct 950965 CCTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAG 951024 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | || ||||| || |||||||||||||| ||||| ||| || ||||| | Sbjct 951025 ATGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTA 951084 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAG 131213 || | || |||| |||||||| |||| ||||| ||| || ||||| || Sbjct 951085 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAG 951134 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || ||| |||| || ||||||||||| ||||||||||| || || Sbjct 950182 TCCTCGAGCTGCTTTCCAGCGAAGATCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTA 950241 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || |||| |||||||| |||| ||||| | Sbjct 950242 TCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATG 950301 Query 131200 GTTTTACCGGTTAG 131213 || || || || || Sbjct 950302 GTCTTTCCAGTGAG 950315 >seq94 Length=713063 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | ||| |||||||| || ||||||||||| Sbjct 172933 CCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 172992 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| | |||||||| || |||||| Sbjct 172993 AGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGG 173052 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 173053 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 173112 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 || | ||| | ||| || || || || || || ||||| |||| Sbjct 173113 TCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGATCT 173155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011814673280