Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 131 3e-25 seq109 125 1e-23 >seq6 Length=1934737 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 ||||||||||| |||| ||| | |||| ||||||| |||| |||||||| |||| Sbjct 649345 CCCCACATGTCGTACTGGAGCTGACCCTGCGAGACGGGGGATCCCTGGTAGGTCGAGTAG 649286 Query 244358 GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 | || || || || | || || | ||||| ||||||| ||||||||||||| Sbjct 649285 GCTCCCTCCTTCTCAGCGATCTCGCACGAAGCCTCGAGAGCGGCGTGGTAGATGGTCTCG 649226 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATG 244477 |||||| |||| | | ||||| | | | |||||| || | | |||||| Sbjct 649225 AAGATCTGGATGTTGAGCTTCTTGGCCTCGGGTCCGTCGAAGGGCATTCGAAGGATCATG 649166 Query 244478 AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||| | ||||| ||||||||||| |||| |||||||||| ||||||| |||||||| Sbjct 649165 AAGGCATCGGCGAGTCCCTGCACTCCGACTCCGATGGGTCGGTGTCGCATGTTGGAG 649109 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||||||||| ||||| || | | ||||| || ||||| ||||||||| Sbjct 648885 GCCAAGTTGCAGACGGCGACCTCGTCGGGAGCAGAGTACTCGATGATCTCCGTGCAGAGG 648826 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 ||| |||||||||| || |||| || || |||||||| |||| ||||||| || Sbjct 648825 TTAGACGACTTGATGGTTCCGAGGTTCTTCTGGTTGGACTTCTGGTTGGCGGCGTCC-TG 648767 Query 244808 TAGA 244811 |||| Sbjct 648766 TAGA 648763 >seq109 Length=150709 Score = 125 bits (138), Expect = 1e-23 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCC--GACGCAACGTTCGGCGAGAGGC 42705 ||||| || ||||| ||||| |||||| | ||| || | || |||| ||| | | Sbjct 8867 AAGGCCGATTGGGCTCTCAAGTGGATCTCG--TCCAAGGAGTCCACCTTCGCTGAGCGAC 8924 Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 | || ||||| ||||||||||||| ||||||||||| || | ||||| |||||||||| Sbjct 8925 TCGTCGCCTTCTCCGCCGTCGAGGGAATCTTCTTCTCTGGATCGTTCGCTTCCATCTTCT 8984 Query 42766 GGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| || ||| | ||||||||||| || ||||| ||||| | ||| ||| Sbjct 8985 GGCTCAAGAAGCGAGGACT-AATGCCCGGACTTACGTTCTCCAACGAGTTGATCTCGAGG 9043 Query 42825 GACGAGGGGCTGCA 42838 |||||||| || || Sbjct 9044 GACGAGGGACTTCA 9057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337228691920