Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq94 105 8e-18 seq17 102 9e-17 >seq94 Length=713063 Score = 105 bits (116), Expect = 8e-18 Identities = 137/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || || || || | || ||||||||||| || ||||| Sbjct 172968 CTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAA 173027 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| |||||| ||||| ||| Sbjct 173028 GATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 173086 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| |||| |||||||| || ||||| || || |||| Sbjct 173087 TGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAA 173146 Query 46581 CAAAGAT 46587 | ||||| Sbjct 173147 CGAAGAT 173153 >seq17 Length=1662258 Score = 102 bits (112), Expect = 9e-17 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||| || || ||||| || | || ||||||||||| || ||||| | Sbjct 950576 CCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 950635 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | || | | |||||| ||| |||||| ||||| ||| | Sbjct 950636 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTG 950694 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | |||||| |||||| || || | |||||||| || || || || Sbjct 950695 TCGATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAG 950744 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || ||||| || | || ||||||||||| || ||||| Sbjct 950146 CCTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAG 950205 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||| ||||||||||| | || | | |||||| ||| |||||| ||||| Sbjct 950206 ATCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGA 950260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237220064840