Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20blollopis_20[genbank_20GCA_5F000950635.1_202014-12-09] 167 sequences; 30,479,820 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq109 111 2e-19 seq94 96.9 3e-15 seq17 91.5 1e-13 >seq109 Length=150709 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 ||||||||||| || || | |||||| ||| || | |||||||| || || || || Sbjct 9051 CCCTCGTCCCTCGAGATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTCCTCGCTTC 8992 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 |||||||| || |||| ||||| || || ||||||| ||||||||||| | ||| Sbjct 8991 TTGAGCCAGAAGATGGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGGCGGAGAAG 8932 Query 133036 GCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 || || || ||||| |||| |||| || ||| | |||||| || ||||| ||| Sbjct 8931 GCGACGAGTCGCTCAGCGAAGGTGGACTCCTTGGACGAGATCCACTTGAGAGCCCAATCG 8872 Query 133096 GCCTTT 133101 |||||| Sbjct 8871 GCCTTT 8866 >seq94 Length=713063 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 || ||||| || || || ||||| || ||||||||| | || || ||| | | |||| | Sbjct 173153 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 173094 Query 38310 GTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368 | | |||| | || | || |||| ||||| ||||| || || | || || ||||| Sbjct 173093 ATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCG 173035 Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 ||||| | ||| || || ||||| || || | || ||||| || ||||||||||| Sbjct 173034 ACTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCA 172975 Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| | || || || ||||| || ||| | |||| || Sbjct 172974 GAAGGAGTCCACCCTTCACTTGGTTCTTCGTCTTCGAGGAGG 172933 >seq17 Length=1662258 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || || ||||| ||| |||| |||||| || |||||| | | | |||| | || Sbjct 951134 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACG-TCAA 951076 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| || ||||| || | || || || || ||||| | ||| || Sbjct 951075 GGCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGG 951016 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA-AAAGG 38433 || || || || |||| || |||||| ||| ||||||||||| ||||| Sbjct 951015 AAAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAAAGG 950965 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || || ||||| ||| |||| |||||| || |||||| | | | |||| | || Sbjct 950315 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACG-TCAA 950257 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| || || |||||||| || | ||||| ||||| | || | ||| || Sbjct 950256 GGCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 950197 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA-AAAGG 38433 || ||||| || || | || || ||| |||||||||||||| ||||| Sbjct 950196 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAAAGG 950146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171755889280